Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KLP38_RS09230 Genome accession   NZ_CP076060
Coordinates   1923045..1924412 (-) Length   455 a.a.
NCBI ID   WP_215527849.1    Uniprot ID   -
Organism   Cupriavidus sp. EM10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1918045..1929412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KLP38_RS09210 (KLP38_09210) - 1918127..1919104 (-) 978 WP_215527845.1 isoaspartyl peptidase/L-asparaginase family protein -
  KLP38_RS09215 (KLP38_09215) - 1919131..1920033 (-) 903 WP_215527846.1 MurR/RpiR family transcriptional regulator -
  KLP38_RS09220 (KLP38_09220) - 1920328..1922250 (+) 1923 WP_215527847.1 ATP-binding cassette domain-containing protein -
  KLP38_RS09225 (KLP38_09225) - 1922422..1922907 (-) 486 WP_215527848.1 disulfide bond formation protein B -
  KLP38_RS09230 (KLP38_09230) radA 1923045..1924412 (-) 1368 WP_215527849.1 DNA repair protein RadA Machinery gene
  KLP38_RS09235 (KLP38_09235) alr 1924443..1925551 (-) 1109 Protein_1852 alanine racemase -
  KLP38_RS09240 (KLP38_09240) lplT 1926023..1927341 (+) 1319 Protein_1853 lysophospholipid transporter LplT -
  KLP38_RS09245 (KLP38_09245) - 1927378..1928463 (-) 1086 WP_215527850.1 DUF1853 family protein -
  KLP38_RS09250 (KLP38_09250) - 1928444..1929358 (-) 915 WP_215527851.1 uracil-DNA glycosylase family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48394.61 Da        Isoelectric Point: 6.7601

>NTDB_id=571747 KLP38_RS09230 WP_215527849.1 1923045..1924412(-) (radA) [Cupriavidus sp. EM10]
MAKTKTVYTCTECGGTTPRWAGQCPQCNAWNTLVETVADSGSSAARRFQPLAASAVVRKLSEIEAADVPRFTTGIDEFDR
VLGGGLVSGGVVLIGGDPGIGKSTLLLQTLANLSASRRVLYVSGEESGAQIALRAQRLGVEAATLGLLPEIQLEKIQAAL
DADKPDVAVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKSSDITIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGD
THSSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEEQVAGSCVLVTQEGTRPLLVEVQALVDTANVPNP
RRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEI
RPSPRGQERLKEAAKLGFTMAVIPKANAPKQPIDGLEVIAVDRLEQAIDRVRHLD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=571747 KLP38_RS09230 WP_215527849.1 1923045..1924412(-) (radA) [Cupriavidus sp. EM10]
ATGGCCAAGACCAAGACTGTCTATACCTGTACAGAGTGCGGCGGTACCACGCCGCGCTGGGCGGGCCAGTGCCCGCAATG
CAACGCGTGGAACACGCTGGTGGAAACCGTGGCCGATTCCGGGTCGTCGGCGGCGCGCCGCTTCCAGCCGCTGGCGGCGT
CGGCCGTGGTCCGCAAGCTGAGCGAGATCGAAGCCGCCGATGTGCCGCGCTTTACCACGGGCATCGACGAATTCGACCGC
GTGCTGGGCGGCGGGCTGGTGTCGGGCGGGGTGGTGCTGATTGGCGGCGACCCCGGCATCGGCAAATCCACGCTGCTGTT
GCAGACGCTGGCCAACCTGTCGGCCAGCCGGCGCGTGCTCTATGTCAGTGGCGAGGAATCGGGCGCCCAGATTGCGTTGC
GTGCGCAGCGGCTGGGGGTGGAGGCCGCCACGCTGGGCCTGCTGCCCGAGATCCAGCTGGAGAAGATCCAGGCCGCGCTG
GACGCCGACAAGCCCGACGTGGCCGTGATCGACTCGATCCAGACGCTGTATTCGGAGGCGCTGACCTCGGCGCCGGGCTC
GGTGGCCCAGGTGCGCGAATGCGCGGCGCAGTTGACCCGTATCGCCAAGAGCAGCGACATCACGATCATCCTGGTGGGCC
ACGTGACCAAGGAAGGCAGCCTGGCCGGGCCGCGCGTGCTGGAACATATCGTCGACACGGTGCTGTATTTCGAGGGCGAT
ACCCATTCGTCGCACCGGCTGATCCGCGCGTTCAAGAACCGCTTCGGTGCGGTCAACGAACTTGGCGTTTTTGCGATGAC
CGAGCGCGGCCTGCGCGGTATCAGCAATCCGTCGGCGCTGTTCCTGTCGCAGCATGAGGAGCAGGTGGCCGGGTCGTGCG
TGCTGGTGACGCAGGAGGGCACCCGCCCGTTGCTGGTGGAAGTGCAGGCGCTGGTCGATACGGCCAACGTGCCCAACCCG
CGCCGCCTGGCCGTAGGCCTGGAGCAGAACCGGCTGGCCATGCTGCTGGCGGTGCTGCACCGGCATGCGGGCATCGCGTG
CTTCGACCAGGACGTCTTCCTGAATGCCGTGGGTGGGGTGAAGATTACGGAGCCGGCCGCCGATCTGGCGGTTTTGCTAT
CAATTCACTCGTCGATGCGCAACAAGCCGCTGCCGCGCGGGCTGGTGGTCTTTGGCGAAGTGGGGCTGGCGGGGGAAATC
CGCCCGAGCCCTCGTGGGCAGGAGCGGCTCAAGGAAGCTGCCAAGCTGGGCTTCACGATGGCCGTGATTCCGAAGGCCAA
CGCGCCCAAGCAGCCCATCGACGGGCTGGAGGTCATCGCCGTGGACCGCCTGGAGCAGGCCATCGACCGCGTGCGGCATC
TGGACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(62-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.766

100

0.51
  radA Streptococcus pneumoniae Rx1

46.32

100

0.47
  radA Streptococcus pneumoniae D39

46.32

100

0.47
  radA Streptococcus pneumoniae R6

46.32

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.32

100

0.47
  radA Streptococcus mitis SK321

46.507

100

0.468
  radA Streptococcus mitis NCTC 12261

46.288

100

0.466