Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KB891_RS06585 Genome accession   NZ_CP076049
Coordinates   1439475..1440842 (+) Length   455 a.a.
NCBI ID   WP_008649103.1    Uniprot ID   A0A132HM32
Organism   Cupriavidus metallidurans strain YL2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1434475..1445842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KB891_RS06570 (KB891_06570) - 1435429..1436538 (+) 1110 WP_215242594.1 DUF1853 family protein -
  KB891_RS06575 (KB891_06575) lplT 1436589..1437908 (-) 1320 WP_024570878.1 lysophospholipid transporter LplT -
  KB891_RS06580 (KB891_06580) alr 1438368..1439474 (+) 1107 WP_024570877.1 alanine racemase -
  KB891_RS06585 (KB891_06585) radA 1439475..1440842 (+) 1368 WP_008649103.1 DNA repair protein RadA Machinery gene
  KB891_RS06590 (KB891_06590) - 1440916..1443012 (-) 2097 WP_024570876.1 hypothetical protein -
  KB891_RS06595 (KB891_06595) - 1443319..1443804 (+) 486 WP_008649101.1 disulfide bond formation protein B -
  KB891_RS06600 (KB891_06600) - 1443892..1445814 (-) 1923 WP_024570875.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48476.76 Da        Isoelectric Point: 7.2043

>NTDB_id=571668 KB891_RS06585 WP_008649103.1 1439475..1440842(+) (radA) [Cupriavidus metallidurans strain YL2]
MAKTKTVYTCTECGGTTPRWAGQCPQCNAWNTLVETVADSGSSAARRFQPLATSAVVRKLSEIEAADVPRFSTGIDEFDR
VLGGGLVAGGVVLIGGDPGIGKSTLLLQTLANLSASRRVLYVSGEESAAQIALRAHRLGVEAATLGLLPEIQLEKIQATL
EADKPEVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKSTGITIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGD
THSSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEEQVAGSCVLVTQEGTRPLLVEVQALVDTANVPNP
RRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEI
RPSPRGQERLKEAAKLGFTMAVIPKANAPKQRIDGLEVIAVDRLEQAIDRVRHLD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=571668 KB891_RS06585 WP_008649103.1 1439475..1440842(+) (radA) [Cupriavidus metallidurans strain YL2]
ATGGCCAAGACCAAGACGGTATACACATGCACCGAGTGCGGTGGCACCACGCCGCGATGGGCGGGCCAGTGCCCACAGTG
CAACGCCTGGAACACGCTGGTGGAAACGGTCGCGGATTCGGGGTCGTCCGCGGCACGCCGTTTCCAGCCGCTGGCGACGT
CCGCTGTGGTGCGCAAGCTGTCGGAGATCGAGGCGGCCGATGTGCCACGCTTCTCGACCGGTATCGACGAATTCGACCGC
GTGCTTGGCGGCGGCCTGGTGGCGGGTGGGGTGGTGCTGATCGGCGGGGACCCCGGCATCGGTAAATCGACCCTGCTGCT
GCAGACGCTGGCCAACCTGTCGGCCAGCCGGCGCGTGCTCTATGTGAGCGGCGAGGAATCCGCCGCCCAGATCGCGCTGC
GCGCCCATCGCCTGGGCGTGGAGGCCGCCACGCTCGGCCTGCTGCCCGAGATTCAGTTGGAGAAGATCCAGGCCACGCTC
GAGGCCGACAAGCCCGAGGTGGCCGTGATCGACTCGATCCAGACGGTTTACTCGGAGGCGCTGACGTCCGCGCCGGGCTC
CGTGGCCCAGGTACGCGAATGCGCGGCGCAACTGACGCGGATCGCCAAGAGTACCGGCATCACGATCATCCTGGTCGGCC
ACGTGACCAAGGAAGGCAGCCTGGCCGGCCCGCGCGTGCTCGAACACATCGTGGACACGGTGCTGTACTTCGAGGGGGAC
ACCCATTCCTCGCACCGCTTGATCCGGGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGTGTATTCGCGATGAC
CGAGCGCGGCCTGCGCGGCATCAGCAATCCGTCGGCGCTGTTTCTTTCCCAGCATGAGGAGCAGGTGGCCGGTTCCTGTG
TGCTGGTGACCCAGGAGGGCACGCGGCCATTGCTGGTCGAAGTGCAGGCGCTGGTCGACACCGCCAACGTGCCGAATCCG
CGCCGGCTGGCCGTGGGCCTGGAACAGAACCGGCTGGCGATGCTGCTGGCCGTGCTGCATCGTCACGCGGGCATCGCGTG
CTTCGACCAGGACGTCTTCCTGAACGCGGTGGGAGGGGTCAAGATCACCGAGCCGGCCGCCGACCTGGCCGTGCTGCTGT
CGATCCATTCGTCGATGCGCAACAAGCCGCTGCCTCGCGGCCTGGTGGTGTTCGGCGAGGTGGGCCTGGCGGGAGAAATC
CGCCCGAGCCCGCGCGGACAGGAGCGGCTCAAGGAAGCCGCCAAGCTTGGCTTCACGATGGCGGTGATCCCAAAGGCCAA
CGCGCCCAAGCAGCGGATCGATGGACTGGAGGTCATCGCGGTGGACCGGCTGGAACAGGCCATCGACCGGGTCAGGCATC
TGGACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(62-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A132HM32

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.985

100

0.512
  radA Streptococcus mitis SK321

46.638

100

0.473
  radA Streptococcus pneumoniae D39

46.537

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.537

100

0.473
  radA Streptococcus pneumoniae R6

46.537

100

0.473
  radA Streptococcus pneumoniae Rx1

46.537

100

0.473
  radA Streptococcus mitis NCTC 12261

46.32

100

0.47