Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KH238_RS18035 Genome accession   NZ_CP076045
Coordinates   3702989..3703279 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain VCN56     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3697989..3708279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH238_RS17995 (KH238_17995) darA 3698005..3698334 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  KH238_RS18000 (KH238_18000) - 3698347..3698787 (+) 441 WP_004264730.1 DUF327 family protein -
  KH238_RS18005 (KH238_18005) holB 3698799..3699788 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  KH238_RS18010 (KH238_18010) ricT 3699791..3700618 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  KH238_RS18015 (KH238_18015) yabA 3700633..3700992 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  KH238_RS18020 (KH238_18020) - 3701053..3701796 (+) 744 WP_007409920.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  KH238_RS18025 (KH238_18025) - 3701783..3702082 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  KH238_RS18030 (KH238_18030) rsmI 3702057..3702938 (+) 882 WP_020953847.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KH238_RS18035 (KH238_18035) abrB 3702989..3703279 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  KH238_RS18040 (KH238_18040) metG 3703763..3705754 (+) 1992 WP_032868381.1 methionine--tRNA ligase -
  KH238_RS18045 (KH238_18045) - 3705830..3706597 (+) 768 WP_032868379.1 TatD family hydrolase -
  KH238_RS18050 (KH238_18050) - 3706732..3708057 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=571649 KH238_RS18035 WP_169510469.1 3702989..3703279(-) (abrB) [Bacillus velezensis strain VCN56]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=571649 KH238_RS18035 WP_169510469.1 3702989..3703279(-) (abrB) [Bacillus velezensis strain VCN56]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979