Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   ABD1_RS14175 Genome accession   NC_020547
Coordinates   3007869..3012389 (-) Length   1506 a.a.
NCBI ID   WP_000658880.1    Uniprot ID   A0A7U7JWV7
Organism   Acinetobacter baumannii D1279779     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 3002869..3017389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD1_RS14145 (ABD1_27500) - 3003276..3003644 (-) 369 WP_001259504.1 YbaN family protein -
  ABD1_RS14150 (ABD1_27510) - 3003749..3004657 (+) 909 WP_001017520.1 DUF1853 family protein -
  ABD1_RS14155 (ABD1_27520) - 3004756..3004899 (+) 144 WP_001984826.1 entericidin A/B family lipoprotein -
  ABD1_RS14160 (ABD1_27530) dapE 3005025..3006158 (+) 1134 WP_001016572.1 succinyl-diaminopimelate desuccinylase -
  ABD1_RS14165 (ABD1_27540) - 3006295..3007176 (-) 882 WP_000022121.1 alpha/beta fold hydrolase -
  ABD1_RS14170 (ABD1_27550) - 3007408..3007872 (-) 465 WP_000678926.1 hypothetical protein -
  ABD1_RS14175 (ABD1_27560) chpA 3007869..3012389 (-) 4521 WP_000658880.1 Hpt domain-containing protein Regulator
  ABD1_RS14180 (ABD1_27570) - 3012536..3014614 (-) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -
  ABD1_RS14185 (ABD1_27580) - 3014661..3015197 (-) 537 WP_000729762.1 chemotaxis protein CheW -
  ABD1_RS14190 (ABD1_27590) - 3015258..3015620 (-) 363 WP_000101096.1 response regulator -
  ABD1_RS14195 (ABD1_27600) pilG 3015644..3016027 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  ABD1_RS14200 (ABD1_27610) - 3016310..3016948 (+) 639 WP_002027721.1 hypothetical protein -

Sequence


Protein


Download         Length: 1506 a.a.        Molecular weight: 171753.06 Da        Isoelectric Point: 4.3429

>NTDB_id=57163 ABD1_RS14175 WP_000658880.1 3007869..3012389(-) (chpA) [Acinetobacter baumannii D1279779]
MKEILKTLTEAMTLPEDSYSEQDAEFLEIFIEEIEEIFVDLQPLINKWMQSDNIATLTEIRRHFHTLKGSGRMIGAKSSA
ELAWTVEDTLNRVINQSLQLTPTIQSYVQLVFKFYFLKLVDNFKQKRAHTLDFRPLILLGQQLQQQQSLEPALEELLQLS
NTLTAETVTGLELGYIEQDSLAEPIIQTTHTEIEINLDETLTLFMEEAEEHLATIHQFLDQELHQYDSYNALIRALHTLR
GSSAMAQVETIFEASTKVEHLFKILLQEELSSHSEEILLLQEYRKFVRDSLELLSRYSSSEQLEARLQQFNQSWDAYVEQ
HGDRTDPLMPSHGLVSQLLQLDVSELLDAELDFEKGIRNEFPDYLERLSEQADLLLQHTHSQAMLGLHEYTSQLKESYEV
LLDKPALLQSDYIFEIYQKAHQQLIQLFDALAAGQRVGVVKQHQSILEELKLYTQYTPDISNDLPQHDSTSFEPISNIEL
EPEVVATVENFSDSADWAVLGQSVQQDRQYISSTQVNRNFDADLLDIFLEEAEELLEGIDTDLNIWIGEQENFAALNNLM
RYLHTLKGGANMVQATYLGLIAHELESIYERLIQKQLVATSDLIDFIRLVQDDLADRLQIMREQQLDYAAPYTINALKRA
GQNSNFQPLPVVEAFDTESEIFSEQEVISEVIIDEIPVELEPALAELETHHDQVFDTAVTELATPVEVITSVTSQENRVA
ADEQDIEAVVEQTFLEEATELLEMAESLLKQWFEQRTNRSILLQLQRAVHSLKGGARMVGLEAVQAIAYQLENAFEQFAL
HHFNSNIYDHLLESAIAWLKDAIFNHNYQHFDGLQQSLENIQFFETTIQIPTKLTRADLFSSEPVMTFIQGDGTEPPPMM
GAWEQTERLDQNNEMIRVSADLIEKMIDLSGENSINRSRIEMDLSQFSHTLVEMELAIQRLADQLRRMEGELETQIIAKH
GIEHSRYTDFDPLEMDQYSSLNQLSKSLAESASDLVDFKNTLSDKIRDTESLLLQQSRIQAEIQEGLMRTRLVPFSRLLP
RLQRIVRQTSTALNRPAELFVNNTEGELDRNILERLVTPLEHMLRNAIDHGLEDRMQRQQANKPETGRIELNIQRQGTDV
VVVFSDDGQGIDVEKVRQKALLAGLIKPEQDLEQQDILQLIFHPGLSTAEQVTQISGRGVGLDVVQSDIKSLGGHVSVES
VYGQGTTFTIRVPTTVAVSDALMVKVADQQFAIPLAQIERIIRVSPASLEQYFESPQELFEYENKRYPLRYLSEFVGNQP
IPRLNGVMYSLPVLMIKANNGQTVALLVDQLIGSRAQIVVKPIGQQFSSIGAIAGATILGDGQVCLILDGQNIARQIQST
QRHKQLSEAVYRQRESDERRLIMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVDAIEQLENIKPDLMLLDIEMPRMDGFE
VLNLVRHHDMHQYMPIIMITSRTGEKHRERAFSLGVSQYMGKPFQEEELLENIDALLVAFESEVKS

Nucleotide


Download         Length: 4521 bp        

>NTDB_id=57163 ABD1_RS14175 WP_000658880.1 3007869..3012389(-) (chpA) [Acinetobacter baumannii D1279779]
ATGAAAGAAATATTAAAAACTTTAACTGAAGCAATGACGCTACCTGAAGATAGCTATTCTGAACAAGATGCTGAGTTTCT
TGAGATCTTCATTGAAGAAATTGAAGAGATTTTTGTTGATTTGCAACCTTTGATAAATAAATGGATGCAGTCTGATAATA
TTGCTACGCTCACTGAAATTCGTCGTCATTTCCATACCTTAAAAGGTTCCGGAAGAATGATTGGTGCTAAATCTTCAGCT
GAGCTTGCGTGGACAGTTGAAGATACACTCAACCGGGTAATCAACCAAAGCTTACAATTAACGCCAACTATCCAGAGCTA
TGTGCAGTTAGTATTTAAGTTCTATTTCCTTAAATTAGTAGATAATTTTAAGCAAAAAAGAGCACATACCTTAGATTTCA
GACCTCTTATTTTATTAGGCCAACAACTACAACAACAGCAAAGTTTAGAACCAGCTTTAGAAGAGCTTTTACAACTTTCA
AATACGCTTACGGCCGAAACAGTGACTGGTCTTGAGCTAGGTTATATCGAACAAGATTCGTTAGCCGAGCCAATCATTCA
AACTACACATACTGAAATTGAAATAAATCTAGATGAAACCTTGACCTTATTTATGGAAGAGGCAGAAGAACATTTAGCCA
CGATCCATCAATTCTTAGATCAAGAGTTACATCAGTACGACAGTTATAACGCTTTAATCCGCGCTTTACATACTTTGCGT
GGTAGCTCTGCAATGGCACAGGTCGAAACAATTTTCGAGGCCAGTACCAAAGTTGAGCATTTATTTAAAATACTGCTGCA
AGAAGAGTTATCTTCTCACTCTGAAGAAATTTTATTATTACAAGAATATCGTAAGTTTGTTCGAGATAGCTTGGAACTAC
TATCTAGATATAGTTCAAGTGAACAGCTCGAAGCGAGATTGCAGCAATTTAATCAATCTTGGGATGCATATGTTGAGCAA
CATGGTGACCGAACAGATCCGTTAATGCCTTCTCATGGCTTGGTATCGCAATTATTACAATTAGATGTTTCTGAATTACT
GGATGCAGAATTAGATTTTGAGAAGGGTATTCGTAATGAGTTTCCTGATTATCTTGAACGCCTAAGTGAACAGGCTGATT
TATTACTGCAACATACTCATTCTCAAGCAATGCTGGGTTTACATGAATATACCAGCCAACTGAAAGAAAGTTATGAAGTG
CTGCTTGATAAACCTGCGTTATTACAATCAGACTATATATTTGAAATTTATCAAAAAGCGCATCAACAGCTCATTCAATT
ATTTGATGCTTTAGCTGCTGGTCAGCGAGTCGGTGTTGTTAAGCAACATCAAAGTATTTTAGAAGAATTAAAACTTTATA
CGCAGTACACTCCAGACATATCAAATGACCTACCTCAGCACGATTCGACATCTTTTGAACCAATATCCAATATTGAACTA
GAGCCAGAAGTAGTAGCTACTGTAGAGAATTTCTCAGACTCTGCAGACTGGGCGGTATTAGGTCAAAGTGTGCAGCAAGA
TCGACAATATATTTCATCTACACAAGTGAATCGAAATTTTGATGCTGATCTTTTAGATATCTTTCTTGAGGAAGCTGAAG
AATTACTTGAGGGAATTGATACCGATCTTAATATTTGGATAGGTGAGCAAGAAAACTTTGCAGCTCTGAACAATCTAATG
CGTTATTTGCATACCTTAAAAGGGGGAGCAAATATGGTTCAGGCAACGTATCTTGGTTTGATTGCCCATGAATTAGAAAG
CATTTATGAGCGTTTAATTCAAAAGCAATTAGTAGCAACTTCAGATTTAATTGATTTTATTCGTTTGGTTCAAGATGACT
TGGCTGATCGTTTACAAATCATGCGTGAACAACAACTAGATTATGCAGCTCCTTACACAATTAACGCATTAAAACGAGCG
GGTCAAAACTCTAACTTCCAACCTTTACCAGTGGTTGAGGCATTTGATACTGAAAGTGAGATATTCTCTGAGCAAGAGGT
GATATCTGAAGTAATAATAGATGAGATACCAGTAGAACTTGAGCCTGCTCTTGCAGAGCTAGAAACTCATCACGATCAGG
TATTCGATACAGCGGTTACCGAGTTAGCTACTCCAGTTGAAGTGATTACCTCGGTTACATCGCAAGAGAATAGAGTTGCA
GCTGATGAACAGGACATTGAGGCTGTTGTTGAACAGACGTTCCTAGAAGAAGCTACTGAATTGTTAGAAATGGCTGAGTC
GCTATTAAAACAATGGTTTGAACAGCGTACAAACCGTAGTATTTTGCTTCAGCTTCAAAGAGCCGTGCACAGTTTAAAAG
GTGGTGCACGGATGGTGGGTTTAGAAGCCGTACAAGCAATTGCCTACCAACTAGAAAATGCTTTTGAACAATTTGCGCTA
CATCACTTCAATTCGAATATTTATGATCATTTATTAGAAAGTGCGATTGCATGGTTAAAAGATGCAATTTTCAACCATAA
TTATCAGCATTTCGATGGATTACAGCAAAGTTTAGAAAATATTCAATTCTTTGAAACTACAATCCAGATTCCAACTAAGT
TAACTAGAGCGGACTTGTTTAGCTCAGAACCAGTGATGACCTTTATACAAGGTGATGGTACAGAGCCTCCACCAATGATG
GGAGCGTGGGAGCAAACAGAGCGTCTGGATCAGAATAATGAAATGATCCGTGTTTCAGCCGACTTAATCGAGAAAATGAT
TGATTTGTCTGGTGAAAACTCCATTAACCGTTCACGAATTGAAATGGACCTAAGCCAGTTTAGCCATACACTAGTTGAAA
TGGAGTTGGCGATTCAACGACTTGCCGATCAGTTACGTCGAATGGAAGGTGAGTTAGAAACACAGATTATTGCTAAACAT
GGAATTGAACATTCTCGTTATACCGACTTTGATCCGTTAGAGATGGACCAGTATTCATCTTTAAATCAATTGTCGAAATC
GCTTGCTGAATCTGCATCGGACTTGGTCGACTTTAAAAATACGTTATCTGACAAGATCAGAGATACCGAAAGTTTGCTTT
TACAACAATCAAGAATTCAAGCGGAAATTCAAGAAGGTTTAATGCGGACACGTTTGGTCCCATTTTCGCGTTTATTGCCG
CGTTTACAACGAATTGTTCGTCAGACGTCTACAGCATTGAATAGACCTGCTGAGCTTTTCGTAAATAATACGGAAGGTGA
GTTGGACCGCAATATTTTAGAACGGTTAGTGACTCCGCTTGAGCATATGCTCAGAAACGCAATTGACCATGGTTTAGAAG
ACCGAATGCAGCGGCAACAAGCAAATAAACCGGAAACAGGGCGTATTGAACTTAATATTCAGCGTCAAGGTACGGATGTT
GTGGTTGTCTTTAGTGATGATGGTCAAGGCATTGATGTTGAAAAAGTACGTCAAAAAGCACTCCTTGCCGGATTGATCAA
GCCAGAACAAGACTTAGAACAGCAAGACATACTGCAACTCATTTTCCATCCAGGTTTAAGTACAGCAGAGCAAGTCACTC
AGATTTCCGGACGTGGTGTAGGTCTTGATGTCGTGCAGAGTGATATTAAGTCTTTGGGTGGACATGTCAGCGTTGAATCC
GTCTATGGGCAGGGAACAACATTTACGATTCGTGTACCGACTACAGTAGCGGTAAGTGATGCCTTAATGGTTAAAGTGGC
AGATCAACAATTTGCGATTCCACTTGCTCAAATCGAACGAATTATTCGAGTGTCACCAGCCTCTTTAGAGCAGTATTTTG
AAAGTCCTCAAGAACTATTTGAGTATGAAAATAAACGTTATCCATTACGTTATCTTTCAGAATTTGTTGGCAACCAACCC
ATACCACGTTTAAATGGTGTGATGTATTCATTACCTGTGTTAATGATTAAAGCCAATAATGGCCAAACTGTGGCATTACT
TGTTGACCAGTTAATTGGCTCTCGAGCGCAAATTGTAGTGAAACCAATTGGTCAACAGTTCTCTAGCATTGGGGCAATTG
CAGGCGCCACAATTTTAGGTGATGGACAGGTCTGCTTAATTTTAGACGGACAAAATATTGCGCGACAAATTCAGTCAACT
CAGCGTCATAAACAACTTAGTGAAGCAGTGTATAGACAACGAGAGTCTGATGAACGCCGTCTCATCATGATTGTAGATGA
CTCAGTAACTGTGCGTAAGGTCACGTCCCGATTACTTGAACGCCAAGGCTATGATGTGGTTACGGCTAAAGATGGTGTTG
ACGCCATAGAGCAGCTAGAAAATATTAAGCCAGATTTGATGCTACTTGATATTGAAATGCCACGTATGGATGGTTTTGAG
GTTCTCAATCTTGTACGACATCATGATATGCATCAATACATGCCAATTATTATGATTACATCCAGAACAGGCGAAAAACA
TCGTGAACGAGCATTCTCGTTAGGTGTGAGTCAATATATGGGTAAACCTTTCCAAGAAGAAGAGTTACTAGAGAATATTG
ATGCTTTACTTGTAGCGTTTGAAAGTGAGGTCAAATCATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

98.539

100

0.985


Multiple sequence alignment