Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   KI239_RS07935 Genome accession   NZ_CP076028
Coordinates   1645131..1645577 (-) Length   148 a.a.
NCBI ID   WP_001790850.1    Uniprot ID   -
Organism   Staphylococcus sp. MZ8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1640131..1650577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI239_RS07905 (KI239_07905) gcvPA 1641058..1642404 (-) 1347 WP_045177127.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  KI239_RS07910 (KI239_07910) gcvT 1642424..1643515 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  KI239_RS07915 (KI239_07915) - 1643674..1644197 (-) 524 Protein_1566 shikimate kinase -
  KI239_RS07920 (KI239_07920) - 1644187..1644333 (-) 147 WP_001789879.1 hypothetical protein -
  KI239_RS07925 (KI239_07925) comGF 1644430..1644927 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  KI239_RS07930 (KI239_07930) comGE 1644845..1645144 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  KI239_RS07935 (KI239_07935) comGD 1645131..1645577 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  KI239_RS07940 (KI239_07940) comGC 1645555..1645866 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  KI239_RS07945 (KI239_07945) comGB 1645880..1646950 (-) 1071 WP_045176802.1 competence type IV pilus assembly protein ComGB Machinery gene
  KI239_RS07950 (KI239_07950) comGA 1646922..1647896 (-) 975 WP_000697227.1 competence type IV pilus ATPase ComGA Machinery gene
  KI239_RS07955 (KI239_07955) - 1647948..1648571 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  KI239_RS07960 (KI239_07960) - 1648568..1648897 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  KI239_RS07965 (KI239_07965) - 1648897..1649883 (-) 987 WP_000161314.1 ROK family glucokinase -
  KI239_RS07970 (KI239_07970) - 1649880..1650083 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17213.42 Da        Isoelectric Point: 10.3682

>NTDB_id=571506 KI239_RS07935 WP_001790850.1 1645131..1645577(-) (comGD) [Staphylococcus sp. MZ8]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=571506 KI239_RS07935 WP_001790850.1 1645131..1645577(-) (comGD) [Staphylococcus sp. MZ8]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993