Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   D805_RS00705 Genome accession   NC_020546
Coordinates   177856..179730 (+) Length   624 a.a.
NCBI ID   WP_015449687.1    Uniprot ID   M4RAF6
Organism   Bifidobacterium thermophilum RBL67     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 172856..184730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D805_RS00685 (D805_0153) - 173260..173835 (-) 576 WP_015449682.1 NADPH-dependent F420 reductase -
  D805_RS00690 (D805_0154) - 174064..174504 (+) 441 WP_015449683.1 helix-turn-helix domain-containing protein -
  D805_RS00695 (D805_0155) - 175024..175653 (+) 630 WP_015449684.1 MarR family winged helix-turn-helix transcriptional regulator -
  D805_RS00700 (D805_0157) rcrP 175870..177765 (+) 1896 WP_015449686.1 ABC transporter ATP-binding protein Regulator
  D805_RS00705 (D805_0158) rcrQ 177856..179730 (+) 1875 WP_015449687.1 ABC transporter ATP-binding protein Regulator
  D805_RS00710 (D805_0159) - 180087..181520 (+) 1434 WP_015449688.1 Fic family protein -
  D805_RS00715 (D805_0161) - 183020..184216 (+) 1197 WP_015449690.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 624 a.a.        Molecular weight: 68129.26 Da        Isoelectric Point: 5.9963

>NTDB_id=57145 D805_RS00705 WP_015449687.1 177856..179730(+) (rcrQ) [Bifidobacterium thermophilum RBL67]
MGHGPGARGAAEKPQDFNAVMGKLAHYSKRYLPAIIIALVLGAFGTVCQIVGPDKLKDITNEITKGLPAIVHGRPVLNSI
DLDAVTHIGFTLVALYVGYALLSYAQSWIMATISQRTAQSLRDDISKKINRLPLRYFDNTSYGDVLSRITNDVDAIGQTL
GQSLGALVTSITLFVGALVMMFANNVTLTLTAIGVSIIGLVLMMLIMRFSQKYFAQQQLALGQTNGHVEEMYAGHVIVKA
YSGEADSIRQFERYNDSLYESGWKSQFLSGLMMPFMTFIGNLGYVAVCVVGAALAMDGHIEFGVIVAFMMYIRLFTQPLA
QFAQAMQNLQRCGAASERVFGFLEEPEMGVDATGSFAEHRAQIEAAQGHAHMSDALGDRARGDVDFDHVRFGYKPDTPVI
YDFSASVKAGQKVAIVGPTGAGKTTMVNLLMRFYELDGGEIRIDGVPTASIPRSEVHRQFSMVLQDTWVFQGTVRDNIVY
DKQGVTDEQVRAAAKAVGLDRFIESLPQGYDTVLDDKAALSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQK
AMDQLAVGRTSFVIAHRLSTIRNADMILVMNHGDIIERGTHQELLDKGGFYADLYNSQFASLVA

Nucleotide


Download         Length: 1875 bp        

>NTDB_id=57145 D805_RS00705 WP_015449687.1 177856..179730(+) (rcrQ) [Bifidobacterium thermophilum RBL67]
ATGGGTCACGGGCCGGGAGCCCGGGGCGCGGCCGAAAAGCCGCAGGATTTCAATGCCGTCATGGGCAAGCTCGCGCACTA
CAGCAAACGCTACCTGCCCGCCATCATCATCGCGCTCGTTCTGGGCGCGTTCGGCACGGTCTGCCAGATTGTCGGACCGG
ACAAGCTCAAGGACATCACCAACGAGATCACCAAGGGCCTGCCTGCCATCGTGCACGGCAGGCCGGTGCTCAACAGCATC
GACCTGGACGCCGTCACTCATATCGGGTTCACCCTGGTTGCGCTGTACGTCGGGTACGCGCTGCTCAGCTACGCGCAAAG
CTGGATCATGGCCACCATCAGCCAGCGGACCGCGCAAAGCCTGCGCGACGACATCTCCAAGAAGATCAACCGCCTGCCGT
TGCGCTACTTCGACAACACGAGCTACGGCGACGTGCTCAGCCGCATCACCAACGATGTCGACGCCATCGGTCAGACGCTG
GGGCAGAGCCTCGGCGCGCTTGTCACGTCGATCACGCTGTTCGTCGGCGCGCTCGTCATGATGTTCGCCAACAACGTCAC
GCTGACGCTGACCGCCATCGGCGTGAGCATCATCGGTCTCGTGCTCATGATGCTCATCATGCGCTTCTCGCAGAAGTACT
TCGCCCAGCAGCAGCTCGCGCTCGGCCAGACCAACGGGCACGTGGAGGAGATGTACGCCGGTCACGTGATCGTCAAGGCC
TACTCCGGCGAAGCGGATTCGATCCGCCAGTTCGAACGCTACAACGACAGCCTGTACGAATCCGGATGGAAATCTCAGTT
CCTGTCGGGCCTCATGATGCCGTTCATGACCTTCATCGGCAACCTCGGCTACGTGGCCGTGTGCGTGGTCGGCGCGGCGC
TCGCGATGGACGGGCACATCGAGTTTGGCGTCATCGTGGCGTTCATGATGTACATCCGCCTGTTCACGCAGCCGCTCGCC
CAGTTCGCGCAGGCCATGCAGAACCTGCAGCGGTGCGGTGCGGCGTCGGAGCGCGTGTTTGGCTTCCTCGAGGAGCCGGA
GATGGGTGTCGACGCGACCGGTAGCTTCGCCGAGCATCGTGCCCAGATCGAGGCGGCACAAGGCCATGCACATATGAGCG
ATGCGTTGGGTGACCGTGCTCGCGGCGACGTGGACTTCGACCATGTGCGCTTCGGCTACAAGCCCGACACGCCGGTCATC
TATGATTTCAGCGCGTCCGTGAAAGCCGGGCAGAAAGTCGCAATCGTTGGGCCGACGGGCGCCGGCAAGACCACGATGGT
CAACCTGCTTATGCGCTTCTACGAGCTGGACGGCGGCGAAATCCGCATCGACGGCGTGCCGACGGCGTCCATCCCGCGCT
CCGAGGTGCACCGCCAGTTCTCCATGGTGCTGCAGGACACTTGGGTGTTCCAGGGCACTGTGCGCGACAACATCGTGTAC
GACAAGCAGGGCGTGACCGACGAGCAGGTGCGGGCCGCCGCGAAGGCCGTAGGACTTGACCGGTTCATCGAATCACTGCC
GCAAGGCTACGACACCGTGCTCGACGATAAGGCCGCGCTGTCTGCTGGGCAGAAGCAGCTGCTTACCATCGCCCGCGCGA
TGGTGCAGGACGCGCCGATCCTGATTCTCGACGAGGCGACATCGTCGGTGGATACGCGCACCGAGGAGCTCATTCAGAAG
GCCATGGACCAGCTGGCCGTCGGCCGTACGAGCTTCGTAATCGCGCACCGCCTGAGCACGATTCGCAACGCGGACATGAT
TCTCGTCATGAACCACGGCGACATCATCGAACGCGGTACGCATCAGGAACTGCTCGACAAGGGCGGCTTCTACGCCGACC
TGTACAACAGCCAGTTCGCCTCGCTCGTCGCGTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(35-319)

ABC transporter (ABC_tran)

(402-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M4RAF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.465

97.115

0.519

Multiple sequence alignment