Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   D805_RS00700 Genome accession   NC_020546
Coordinates   175870..177765 (+) Length   631 a.a.
NCBI ID   WP_015449686.1    Uniprot ID   M4RE42
Organism   Bifidobacterium thermophilum RBL67     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 170870..182765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D805_RS00680 (D805_0152) - 171831..173090 (+) 1260 WP_026650661.1 OFA family MFS transporter -
  D805_RS00685 (D805_0153) - 173260..173835 (-) 576 WP_015449682.1 NADPH-dependent F420 reductase -
  D805_RS00690 (D805_0154) - 174064..174504 (+) 441 WP_015449683.1 helix-turn-helix domain-containing protein -
  D805_RS00695 (D805_0155) - 175024..175653 (+) 630 WP_015449684.1 MarR family winged helix-turn-helix transcriptional regulator -
  D805_RS00700 (D805_0157) rcrP 175870..177765 (+) 1896 WP_015449686.1 ABC transporter ATP-binding protein Regulator
  D805_RS00705 (D805_0158) rcrQ 177856..179730 (+) 1875 WP_015449687.1 ABC transporter ATP-binding protein Regulator
  D805_RS00710 (D805_0159) - 180087..181520 (+) 1434 WP_015449688.1 Fic family protein -

Sequence

Protein


Download         Length: 631 a.a.        Molecular weight: 69426.01 Da        Isoelectric Point: 5.3056

>NTDB_id=57144 D805_RS00700 WP_015449686.1 175870..177765(+) (rcrP) [Bifidobacterium thermophilum RBL67]
MIRICKYLSKAEWFQLFVGLLFIVAGVWLQLKLPDYMADITRLVETPNSEMHDVWVAGGKMLAVALGAMLTTVAVGFITA
RVSASFTQRLRSMQFRRVESFGPEELDRFSTASLITRSTNDVTQIQMFLTMGLLMLVQSPIMAVWAIAKIAGKGVEWTAA
TGVSLVLVMGAVAIIMAMVMPKFRSMQALTDNINRVARENLTGLRVVRAYNAEDYQQGKFDKANRDLTETQLFTNRAMSI
MMPLMNTVMNGLTLAVYWIGAYLIDAAGLMDKLTLFSNMVVFSSYAIQVIMSFLMMSMVFVLWPRADVSAKRILEVLDTE
PHVTDGTRTEGAKNADGTLVRGRVEFRDVSFTYPDAREPMLEHVSFTAQPGQTVAFIGSTGSGKTTLVNLVPRFYDATDG
QVLVDGVDVKDYTLQSLRDKIGYVPQQSVMFKGTVASNVAFGDKSQAGVLPAGESMADVEIADTSTPQGRAREKALLAES
EHGTTLSEAQMEDVRQAVAVAKADEFVTRMDGTYEAPIAQGGTNVSGGQKQRLSIARAVWRHPEILVFDDSFSALDFRTD
HDVREALAREAGDATKLIVAQRIGTIMDADRIIVLDQGRVVGQGTHKELLRDCEVYRQIAESQLSEAELAS

Nucleotide


Download         Length: 1896 bp        

>NTDB_id=57144 D805_RS00700 WP_015449686.1 175870..177765(+) (rcrP) [Bifidobacterium thermophilum RBL67]
GTGATACGAATCTGCAAATACCTCTCCAAGGCCGAATGGTTCCAGCTGTTCGTCGGCCTGCTGTTCATCGTCGCCGGCGT
CTGGCTCCAGCTCAAGCTGCCCGACTACATGGCCGACATCACCCGGCTCGTGGAAACCCCGAACAGCGAAATGCACGACG
TGTGGGTCGCCGGCGGCAAGATGCTCGCCGTGGCGCTCGGCGCCATGCTCACGACCGTCGCCGTCGGTTTCATCACGGCT
CGCGTCTCCGCATCCTTCACCCAGCGTCTGCGCTCCATGCAGTTCCGCCGCGTGGAGTCCTTCGGTCCCGAGGAGCTGGA
CCGCTTCTCCACTGCGAGCCTTATCACCCGCTCCACCAATGATGTCACCCAGATCCAGATGTTCCTCACCATGGGCCTGC
TCATGCTCGTGCAGTCGCCGATCATGGCCGTGTGGGCAATCGCCAAGATCGCCGGCAAAGGTGTCGAATGGACGGCCGCG
ACAGGCGTGTCGCTCGTGCTGGTCATGGGCGCCGTCGCCATCATCATGGCCATGGTCATGCCGAAATTCCGCAGCATGCA
GGCCCTGACCGACAACATCAACCGCGTGGCCCGCGAGAATCTCACCGGCCTGCGCGTGGTGCGCGCCTACAATGCCGAGG
ACTACCAGCAGGGCAAGTTCGACAAGGCGAACCGCGACCTGACCGAAACCCAGCTGTTCACCAACCGCGCGATGTCCATC
ATGATGCCGCTCATGAACACGGTCATGAACGGCCTGACCCTCGCCGTGTACTGGATCGGCGCGTACCTCATCGACGCGGC
CGGCCTCATGGACAAGCTCACGCTGTTTTCCAACATGGTGGTGTTCTCCAGCTACGCCATCCAGGTCATCATGAGCTTCC
TCATGATGAGCATGGTGTTCGTGCTGTGGCCGCGCGCGGACGTCTCGGCCAAGCGCATCCTCGAGGTGCTCGACACCGAG
CCGCATGTCACCGACGGCACGCGCACGGAGGGTGCGAAGAACGCGGACGGCACACTGGTGCGCGGACGTGTGGAATTCCG
CGACGTGAGCTTCACCTACCCTGATGCGCGCGAACCCATGCTCGAACACGTGAGCTTCACCGCACAGCCCGGCCAGACCG
TCGCCTTCATCGGCTCCACCGGCTCCGGCAAGACCACGCTTGTGAACCTCGTGCCGCGCTTCTACGACGCCACCGACGGC
CAGGTGCTCGTCGACGGCGTGGACGTGAAGGACTACACCTTGCAATCGCTACGCGACAAGATCGGCTATGTGCCGCAGCA
GTCCGTGATGTTCAAGGGAACCGTCGCCTCGAACGTGGCGTTCGGTGACAAAAGCCAGGCTGGCGTACTGCCGGCGGGCG
AGAGCATGGCGGACGTCGAGATCGCCGACACCTCCACCCCGCAGGGGCGTGCACGCGAAAAGGCGCTGCTCGCGGAATCC
GAGCACGGCACTACGCTGAGCGAGGCGCAGATGGAAGACGTACGCCAGGCCGTGGCCGTCGCGAAGGCCGATGAATTCGT
CACCCGCATGGACGGCACCTACGAGGCGCCGATCGCCCAAGGCGGCACGAACGTGTCCGGCGGGCAGAAGCAGCGCCTGT
CGATCGCGCGGGCCGTATGGCGGCACCCTGAGATTCTCGTATTCGATGATTCCTTCTCCGCGCTTGATTTCCGCACCGAC
CACGATGTGCGCGAGGCGCTCGCCCGCGAGGCCGGGGATGCGACGAAACTCATCGTCGCCCAGCGCATCGGCACGATCAT
GGACGCCGACCGGATCATCGTGCTCGACCAAGGGCGCGTCGTGGGCCAAGGCACGCACAAGGAACTGCTGCGTGACTGCG
AAGTCTACCGCCAGATCGCCGAAAGCCAGCTGAGCGAAGCCGAACTCGCCTCCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-551)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M4RE42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

47.123

100

0.48

Multiple sequence alignment