Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MN130_RS02950 Genome accession   NZ_CP093354
Coordinates   635392..637389 (+) Length   665 a.a.
NCBI ID   WP_031756019.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain E113     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 630392..642389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN130_RS02930 (MN130_02930) - 630629..631372 (-) 744 WP_023089506.1 metallophosphoesterase -
  MN130_RS02935 (MN130_02935) - 631577..632881 (+) 1305 WP_031756021.1 ferric reductase-like transmembrane domain-containing protein -
  MN130_RS02940 (MN130_02940) metK 632938..634128 (-) 1191 WP_003084948.1 methionine adenosyltransferase -
  MN130_RS02945 (MN130_02945) - 634144..635145 (-) 1002 WP_003113231.1 metalloregulator ArsR/SmtB family transcription factor -
  MN130_RS02950 (MN130_02950) recP/tkt 635392..637389 (+) 1998 WP_031756019.1 transketolase Machinery gene
  MN130_RS02955 (MN130_02955) - 637389..638453 (+) 1065 WP_003101600.1 hypothetical protein -
  MN130_RS02960 (MN130_02960) otnI 638434..639231 (-) 798 WP_003113230.1 2-oxo-tetronate isomerase -
  MN130_RS02965 (MN130_02965) epd 639446..640507 (+) 1062 WP_003084958.1 erythrose-4-phosphate dehydrogenase -
  MN130_RS02970 (MN130_02970) - 640513..641676 (+) 1164 WP_023105713.1 phosphoglycerate kinase -
  MN130_RS02975 (MN130_02975) - 641749..641949 (+) 201 WP_003084961.1 hypothetical protein -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 72221.26 Da        Isoelectric Point: 4.8826

>NTDB_id=571369 MN130_RS02950 WP_031756019.1 635392..637389(+) (recP/tkt) [Pseudomonas aeruginosa strain E113]
MPSRRERANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDYMQHNPSNPQWANRDRFVLSNGHGSMLIYSLLHLTGY
DLGIEDLKNFRQLNSRTPGHPEYGYTAGVETTTGPLGQGIANAVGMALAEKVLAAQFNRDGHAVVDHYTYAFLGDGCMME
GISHEVASLAGTLRLNKLIAFYDDNGISIDGEVHGWFTDDTPKRFEAYGWQVIRNVDGHDADEIKTAIDTARKSDQPTLI
CCKTVIGFGSPNKQGKEECHGAPLGADEIAATRAALGWEHAPFEIPAQIYAEWDAKETGAAQEAEWNKRFAAYQAAHPEL
AAELLRRLKGELPADFAEKAAAYVADVANKGETIASRKASQNALNAFGPLLPELLGGSADLAGSNLTLWKGCKGVSADDA
AGNYVFYGVREFGMSAIMNGVALHGGFIPYGATFLIFMEYARNAVRMSALMKQRVLYVFTHDSIGLGEDGPTHQPIEQLA
SLRLTPNLDTWRPADAVESAVAWKHAIERADGPSALIFSRQNLPHQARDVAQVADIARGGYVLKDCEGEPELILIATGSE
VGLAVQAYDELSEQGRKVRVVSMPCTSVYEQQDESYKQSVLPVEVGARIAIEAAHADYWYKYVGLDGRIIGMTSFGESAP
APALFEHFGFTLDNVLAVAEELLED

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=571369 MN130_RS02950 WP_031756019.1 635392..637389(+) (recP/tkt) [Pseudomonas aeruginosa strain E113]
ATGCCCAGCCGTCGTGAGCGAGCCAATGCCATCCGTGCACTGAGCATGGATGCCGTGCAGAAAGCCAACAGCGGCCACCC
GGGCGCCCCGATGGGCATGGCCGATATCGCCGAGGTCCTCTGGCGCGACTACATGCAGCACAACCCGAGCAACCCGCAGT
GGGCCAACCGCGACCGCTTCGTGCTGTCCAACGGCCACGGCTCGATGCTGATCTACTCCCTGCTGCACCTCACCGGGTAC
GACCTCGGCATCGAGGACCTGAAGAACTTCCGCCAGCTCAACTCGCGCACCCCGGGCCACCCGGAGTACGGCTACACCGC
CGGCGTCGAGACCACCACCGGTCCGCTCGGCCAGGGCATCGCCAATGCGGTGGGCATGGCGCTGGCGGAGAAGGTCCTGG
CCGCCCAGTTCAACCGCGACGGCCACGCGGTGGTCGACCACTACACCTACGCCTTCCTCGGCGACGGCTGCATGATGGAA
GGCATTTCCCATGAGGTCGCCTCGCTGGCCGGCACCCTGCGCCTGAACAAGCTGATCGCCTTCTACGACGACAACGGCAT
TTCCATCGACGGCGAAGTCCACGGCTGGTTCACCGACGACACCCCGAAGCGCTTCGAGGCCTATGGCTGGCAAGTGATCC
GCAACGTCGACGGGCATGACGCCGACGAGATCAAGACCGCCATCGATACCGCGCGCAAGAGCGACCAGCCGACCCTGATC
TGCTGCAAGACCGTGATCGGTTTCGGCTCGCCGAACAAGCAGGGCAAGGAAGAGTGCCACGGCGCGCCGCTGGGCGCCGA
CGAGATCGCCGCGACCCGCGCCGCGCTGGGCTGGGAGCACGCTCCGTTCGAGATCCCGGCGCAGATCTACGCCGAGTGGG
ACGCCAAGGAAACCGGCGCCGCCCAGGAAGCCGAGTGGAACAAGCGTTTCGCCGCCTACCAGGCTGCCCATCCGGAACTG
GCCGCCGAATTGCTGCGCCGCCTGAAGGGCGAGCTGCCGGCCGACTTCGCCGAGAAGGCCGCGGCCTACGTCGCCGATGT
TGCCAACAAGGGTGAGACCATCGCCAGCCGCAAGGCCAGCCAGAACGCGCTGAACGCTTTCGGCCCGCTGCTGCCGGAGC
TGCTCGGCGGTTCCGCCGACCTGGCCGGCTCCAACCTGACCCTGTGGAAGGGCTGCAAGGGCGTCAGCGCCGACGACGCT
GCCGGCAACTACGTGTTCTACGGCGTGCGCGAATTCGGCATGAGCGCGATCATGAATGGCGTCGCCCTGCACGGCGGTTT
CATTCCCTACGGTGCGACCTTCCTGATCTTCATGGAATACGCGCGCAACGCCGTGCGCATGTCCGCACTGATGAAGCAGC
GCGTGCTCTACGTGTTCACCCACGACTCCATCGGCCTCGGCGAGGACGGCCCGACCCACCAGCCGATCGAACAACTGGCC
AGCCTGCGCCTGACCCCGAACCTGGACACCTGGCGCCCGGCCGACGCGGTCGAGTCGGCGGTGGCCTGGAAGCATGCCAT
CGAGCGTGCCGACGGTCCGTCCGCGCTGATCTTCTCTCGCCAGAACCTGCCGCACCAGGCGCGCGACGTCGCCCAGGTGG
CCGACATCGCCCGCGGCGGCTACGTGCTGAAGGACTGCGAAGGCGAGCCGGAACTGATCCTGATCGCCACCGGTTCGGAA
GTCGGCCTGGCCGTGCAGGCCTACGACGAGCTCAGCGAGCAGGGCCGCAAGGTCCGTGTGGTATCGATGCCATGCACCAG
CGTCTACGAGCAGCAGGACGAGTCCTACAAGCAGTCCGTGCTGCCGGTGGAAGTCGGCGCGCGCATCGCCATCGAGGCCG
CCCATGCCGACTACTGGTACAAGTACGTCGGTCTCGACGGGCGCATCATCGGCATGACCAGCTTCGGCGAGTCGGCGCCG
GCCCCGGCGCTGTTCGAGCACTTCGGCTTCACCCTGGACAACGTCCTGGCGGTGGCCGAGGAGCTGCTGGAAGACTGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(353-525)

Transketolase, C-terminal domain (Transketolase_C)

(540-655)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(5-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.485

99.248

0.481