Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KLF39_RS12520 Genome accession   NZ_CP076004
Coordinates   2712685..2714070 (-) Length   461 a.a.
NCBI ID   WP_406807665.1    Uniprot ID   -
Organism   Clostridium perfringens strain 1293/86     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2707685..2719070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KLF39_RS12500 (KLF39_12415) ispD 2709057..2709734 (-) 678 WP_011593147.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  KLF39_RS12505 (KLF39_12420) - 2709748..2710854 (-) 1107 WP_011593148.1 PIN/TRAM domain-containing protein -
  KLF39_RS12510 (KLF39_12425) - 2711166..2711567 (+) 402 WP_111945051.1 DUF1573 domain-containing protein -
  KLF39_RS12515 (KLF39_12430) disA 2711601..2712665 (-) 1065 WP_011593150.1 DNA integrity scanning diadenylate cyclase DisA -
  KLF39_RS12520 (KLF39_12435) radA 2712685..2714070 (-) 1386 WP_406807665.1 DNA repair protein RadA Machinery gene
  KLF39_RS12525 (KLF39_12440) nagB 2714291..2715019 (-) 729 WP_111945050.1 glucosamine-6-phosphate deaminase -
  KLF39_RS12530 (KLF39_12445) - 2715016..2715738 (-) 723 WP_111916647.1 GntR family transcriptional regulator -
  KLF39_RS12535 (KLF39_12450) - 2715938..2716102 (+) 165 WP_164801785.1 hypothetical protein -
  KLF39_RS12540 (KLF39_12455) - 2716196..2716423 (+) 228 WP_011593154.1 glutaredoxin family protein -
  KLF39_RS12545 (KLF39_12460) - 2716546..2717994 (-) 1449 WP_115639186.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase -
  KLF39_RS12550 (KLF39_12465) - 2718011..2718244 (-) 234 WP_003452243.1 glutaredoxin family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50689.61 Da        Isoelectric Point: 8.1872

>NTDB_id=571305 KLF39_RS12520 WP_406807665.1 2712685..2714070(-) (radA) [Clostridium perfringens strain 1293/86]
MKKYGVGKVAKVRSIYVCQNCGYETPKWMGKCPECNNWNTLVEEIRDAKSNQSSPKVERQIGELKKIKEIKSGEKERYDT
GIGELNRVLGGGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRGDRLKVDAEELYIVSETN
LDVIEAYIDKLEPAFIIIDSIQTIYRETVSSAPGSVSQVKECSNAVMRIAKGKNIPLFIVAHVTKQGDLAGPRVLEHMVD
TVLSFEGERTEEFRILRTMKNRFGTTAEIGVFEMRGEGLIQVYDPSSMFLEDTSFNQEGSVVIGVMEGTRPILVEIQSLA
SETKAVMPRRTSVGVENSRLSLILAVLEKKLRVPFYNTDVYVNVVGGLEIEGTTADLGIAISLVSSVKGKAARLEKLVVV
GEVGLTGEIRPISNCDRILNEAEKMGFSNAVVPYRSLEKLKGSKLNLIGVKTLREAIGKIF

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=571305 KLF39_RS12520 WP_406807665.1 2712685..2714070(-) (radA) [Clostridium perfringens strain 1293/86]
ATGAAGAAATATGGAGTTGGTAAAGTGGCAAAGGTTAGAAGCATATATGTATGTCAAAATTGTGGATATGAAACACCTAA
ATGGATGGGTAAATGTCCAGAATGTAATAATTGGAATACTTTAGTTGAAGAGATTAGAGATGCTAAGAGTAATCAATCTT
CTCCTAAGGTTGAAAGACAAATTGGTGAGCTTAAAAAGATAAAAGAAATTAAATCAGGTGAAAAGGAAAGATATGATACT
GGAATTGGTGAATTAAATAGAGTATTAGGTGGAGGTCTTGTTAAGGGATCGCTTACACTTATATCTGGTGACCCTGGAAT
AGGTAAATCTACACTTCTTTTACAAACAGCCAATAATATTTCAAAAAAATATGGGAAAGTTTTATATGTTTCTGGAGAAG
AATCAGAAGAACAAATAAAAATAAGAGGAGACAGATTAAAAGTTGATGCAGAAGAACTTTATATAGTTTCCGAAACTAAT
CTTGATGTAATAGAAGCATATATAGATAAACTTGAACCAGCTTTCATAATAATAGATTCAATACAAACAATTTATAGAGA
AACAGTTTCTTCAGCACCAGGAAGTGTTTCACAGGTTAAAGAATGCTCAAATGCTGTAATGAGAATTGCTAAAGGGAAAA
ATATTCCTTTATTTATAGTTGCTCATGTTACTAAGCAAGGAGATTTAGCTGGACCAAGAGTATTAGAACACATGGTGGAT
ACTGTATTATCCTTTGAAGGGGAAAGAACTGAAGAGTTTAGAATATTAAGAACCATGAAAAATAGATTTGGTACTACGGC
TGAAATAGGTGTTTTTGAAATGCGTGGAGAGGGATTAATTCAGGTTTATGATCCATCTAGCATGTTCTTAGAGGACACTA
GTTTTAATCAAGAAGGGTCAGTTGTAATTGGAGTCATGGAAGGAACTAGACCTATTCTTGTGGAAATACAATCATTAGCA
TCTGAAACAAAAGCAGTTATGCCTAGAAGAACCTCTGTAGGAGTAGAAAATTCAAGGTTAAGTTTAATATTAGCTGTATT
AGAAAAGAAATTAAGAGTTCCTTTTTATAATACTGATGTTTATGTAAATGTAGTAGGAGGACTTGAAATAGAAGGTACTA
CAGCAGACTTAGGAATTGCCATTTCACTTGTATCCTCTGTTAAAGGTAAGGCAGCTAGATTAGAAAAATTAGTTGTTGTA
GGCGAGGTTGGGTTAACAGGTGAAATAAGACCAATATCAAATTGTGACAGAATATTAAATGAAGCAGAAAAAATGGGATT
TTCAAATGCAGTTGTTCCTTATAGAAGCTTAGAAAAACTAAAGGGAAGTAAATTAAATCTTATAGGAGTAAAAACTTTAA
GGGAAGCAATAGGAAAGATATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(351-434)

AAA domain (AAA_25)

(78-228)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.89

98.265

0.49
  radA Streptococcus pneumoniae Rx1

47.577

98.482

0.469
  radA Streptococcus pneumoniae D39

47.577

98.482

0.469
  radA Streptococcus pneumoniae R6

47.577

98.482

0.469
  radA Streptococcus pneumoniae TIGR4

47.577

98.482

0.469
  radA Streptococcus mitis SK321

47.357

98.482

0.466
  radA Streptococcus mitis NCTC 12261

47.357

98.482

0.466