Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MNY35_RS11130 Genome accession   NZ_CP093298
Coordinates   2351285..2351575 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MN-13     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2346285..2356575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY35_RS11115 (MNY35_11115) - 2346507..2347832 (-) 1326 WP_023356663.1 G5 and 3D domain-containing protein -
  MNY35_RS11120 (MNY35_11120) - 2347967..2348734 (-) 768 WP_032868379.1 TatD family hydrolase -
  MNY35_RS11125 (MNY35_11125) metG 2348811..2350802 (-) 1992 WP_011996169.1 methionine--tRNA ligase -
  MNY35_RS11130 (MNY35_11130) abrB 2351285..2351575 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  MNY35_RS11135 (MNY35_11135) rsmI 2351625..2352506 (-) 882 WP_040238641.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MNY35_RS11140 (MNY35_11140) - 2352481..2352780 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  MNY35_RS11145 (MNY35_11145) - 2352767..2353510 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  MNY35_RS11150 (MNY35_11150) yabA 2353571..2353930 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  MNY35_RS11155 (MNY35_11155) yaaT 2353945..2354772 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT Regulator
  MNY35_RS11160 (MNY35_11160) holB 2354775..2355764 (-) 990 WP_033575250.1 DNA polymerase III subunit delta' -
  MNY35_RS11165 (MNY35_11165) - 2355776..2356216 (-) 441 WP_004264730.1 DUF327 family protein -
  MNY35_RS11170 (MNY35_11170) darA 2356229..2356558 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=571209 MNY35_RS11130 WP_169510469.1 2351285..2351575(+) (abrB) [Bacillus amyloliquefaciens strain MN-13]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=571209 MNY35_RS11130 WP_169510469.1 2351285..2351575(+) (abrB) [Bacillus amyloliquefaciens strain MN-13]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCAATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAGGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979