Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   MNY35_RS11045 Genome accession   NZ_CP093298
Coordinates   2336102..2336332 (-) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain MN-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2331102..2341332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY35_RS11035 (MNY35_11035) spoVT 2331826..2332362 (-) 537 WP_004264646.1 stage V sporulation protein T -
  MNY35_RS11040 (MNY35_11040) mfd 2332499..2336032 (-) 3534 WP_033575247.1 transcription-repair coupling factor -
  MNY35_RS11045 (MNY35_11045) subA/fin 2336102..2336332 (-) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  MNY35_RS11050 (MNY35_11050) pth 2336394..2336960 (-) 567 WP_004264652.1 aminoacyl-tRNA hydrolase -
  MNY35_RS11055 (MNY35_11055) - 2337045..2337653 (-) 609 WP_033575248.1 50S ribosomal protein L25/general stress protein Ctc -
  MNY35_RS11060 (MNY35_11060) - 2337738..2338691 (-) 954 WP_007409928.1 ribose-phosphate diphosphokinase -
  MNY35_RS11065 (MNY35_11065) glmU 2338713..2340083 (-) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  MNY35_RS11070 (MNY35_11070) spoVG 2340275..2340568 (-) 294 WP_280153077.1 septation regulator SpoVG -
  MNY35_RS11075 (MNY35_11075) ridA 2340764..2341144 (-) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=571208 MNY35_RS11045 WP_004264650.1 2336102..2336332(-) (subA/fin) [Bacillus amyloliquefaciens strain MN-13]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=571208 MNY35_RS11045 WP_004264650.1 2336102..2336332(-) (subA/fin) [Bacillus amyloliquefaciens strain MN-13]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAGCGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868