Detailed information NTG0571202

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: MNY35_RS09825
• Genome accession: NZ_CP093298
• Coordinates: 2085218..2086339 (-)
• Length: 373 a.a.
• NCBI ID: WP_033575143.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MN-13
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2080218..2091339

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MNY35_RS09805 (MNY35_09805)	-	2080666..2081361 (-)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-
MNY35_RS09810 (MNY35_09810)	-	2081416..2082375 (-)	960	WP_031378693.1	metal ABC transporter substrate-binding protein	-
MNY35_RS09815 (MNY35_09815)	-	2082560..2084239 (-)	1680	WP_039252865.1	alpha-glucosidase	-
MNY35_RS09820 (MNY35_09820)	-	2084323..2085102 (-)	780	WP_039252868.1	glucose 1-dehydrogenase	-
MNY35_RS09825 (MNY35_09825)	rapF	2085218..2086339 (-)	1122	WP_033575143.1	tetratricopeptide repeat protein	Regulator
MNY35_RS09830 (MNY35_09830)	-	2086449..2086952 (+)	504	WP_033575142.1	M15 family metallopeptidase	-
MNY35_RS09835 (MNY35_09835)	-	2086949..2088307 (-)	1359	WP_033575141.1	YcdB/YcdC domain-containing protein	-
MNY35_RS09840 (MNY35_09840)	-	2088508..2089908 (-)	1401	WP_033575140.1	YcdB/YcdC domain-containing protein	-
MNY35_RS09845 (MNY35_09845)	-	2090035..2091030 (+)	996	WP_033575139.1	DUF5105 domain-containing protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.49 Da
• Isoelectric Point: 5.0032

>NTDB_id=571202 MNY35_RS09825 WP_033575143.1 2085218..2086339(-) (rapF) [Bacillus amyloliquefaciens strain MN-13]
MKSKIPSEEVAVKMNEWYKLIRAFEADQAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHQRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=571202 MNY35_RS09825 WP_033575143.1 2085218..2086339(-) (rapF) [Bacillus amyloliquefaciens strain MN-13]
ATGAAATCCAAAATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TCAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCCCTGGAATACCTCGAATGCGCCTTGGAACACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAAGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATCCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATCAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402