Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   MNY35_RS09120 Genome accession   NZ_CP093298
Coordinates   1921121..1921555 (-) Length   144 a.a.
NCBI ID   WP_015416842.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MN-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1916121..1926555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY35_RS09105 (MNY35_09100) - 1916723..1917571 (-) 849 WP_033575066.1 diguanylate cyclase -
  MNY35_RS09110 (MNY35_09105) - 1917552..1918637 (-) 1086 WP_033575067.1 hypothetical protein -
  MNY35_RS09115 (MNY35_09110) - 1918871..1921057 (-) 2187 WP_033575096.1 DNA topoisomerase III -
  MNY35_RS09120 (MNY35_09115) lrpC 1921121..1921555 (-) 435 WP_015416842.1 Lrp/AsnC family transcriptional regulator Machinery gene
  MNY35_RS09125 (MNY35_09120) - 1921731..1922021 (+) 291 WP_007410179.1 DUF3817 domain-containing protein -
  MNY35_RS09130 (MNY35_09125) - 1922059..1922868 (-) 810 WP_015416841.1 lipid II flippase Amj family protein -
  MNY35_RS09135 (MNY35_09130) - 1923368..1923790 (-) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  MNY35_RS09140 (MNY35_09135) - 1923797..1924420 (-) 624 WP_015416840.1 GNAT family protein -
  MNY35_RS09145 (MNY35_09140) - 1924509..1925012 (-) 504 WP_007410308.1 D-lyxose/D-mannose family sugar isomerase -
  MNY35_RS09150 (MNY35_09145) - 1925025..1925885 (-) 861 WP_007410307.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16506.16 Da        Isoelectric Point: 8.6776

>NTDB_id=571190 MNY35_RS09120 WP_015416842.1 1921121..1921555(-) (lrpC) [Bacillus amyloliquefaciens strain MN-13]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPISCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKMNADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=571190 MNY35_RS09120 WP_015416842.1 1921121..1921555(-) (lrpC) [Bacillus amyloliquefaciens strain MN-13]
ATGAAACTAGATAATGTGGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAACTGGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAACGTGTCAGACAGCTTGAATCCTTCGGCGTCATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATTGGGCTTCCCATCTCCTGCATTGTCGAAGCGACGGTGAAAAACGGGAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
GAACGCGGACAGCCTGGAAACGATCGAACACTTCATCAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

80.142

97.917

0.785