Detailed information NTG0571189

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: MNY35_RS09050
• Genome accession: NZ_CP093298
• Coordinates: 1902512..1903642 (-)
• Length: 376 a.a.
• NCBI ID: WP_014304380.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MN-13
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1897512..1908642

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MNY35_RS09020 (MNY35_09020)	-	1898303..1899580 (+)	1278	WP_088005335.1	Nramp family divalent metal transporter	-
MNY35_RS09025 (MNY35_09025)	-	1899685..1899951 (+)	267	WP_015416855.1	hypothetical protein	-
MNY35_RS09030 (MNY35_09030)	-	1900177..1900755 (+)	579	WP_015416854.1	hypothetical protein	-
MNY35_RS09035 (MNY35_09035)	-	1900851..1901408 (+)	558	WP_033575058.1	hypothetical protein	-
MNY35_RS19810	-	1901422..1901601 (+)	180	WP_033575059.1	hypothetical protein	-
MNY35_RS09040 (MNY35_09040)	-	1901788..1902018 (+)	231	WP_033575060.1	hypothetical protein	-
MNY35_RS09045	-	1902378..1902512 (-)	135	WP_254922222.1	hypothetical protein	-
MNY35_RS09050 (MNY35_09045)	rapC	1902512..1903642 (-)	1131	WP_014304380.1	Rap family tetratricopeptide repeat protein	Regulator
MNY35_RS09055 (MNY35_09050)	-	1903779..1903982 (-)	204	WP_228767510.1	DUF2651 family protein	-
MNY35_RS09060 (MNY35_09055)	-	1904058..1905191 (-)	1134	WP_025853743.1	hypothetical protein	-
MNY35_RS09065 (MNY35_09060)	-	1905254..1906021 (-)	768	WP_079890911.1	septation ring formation regulator EzrA	-
MNY35_RS09070 (MNY35_09065)	-	1906438..1906701 (-)	264	Protein_1778	peptidoglycan-binding domain-containing protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44712.10 Da
• Isoelectric Point: 5.2992

>NTDB_id=571189 MNY35_RS09050 WP_014304380.1 1902512..1903642(-) (rapC) [Bacillus amyloliquefaciens strain MN-13]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAISYYRKAERELNAVSDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKSQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSIARGLDEEKVKRIIGVIFHNLGLVYLRGKNLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETEVK
QSLGYLEEKRLWSDFAELTEKLGDFHFEKRNYAEGRNFLKKTIHAQTQILKVTEAI

Nucleotide

• Length: 1131 bp

>NTDB_id=571189 MNY35_RS09050 WP_014304380.1 1902512..1903642(-) (rapC) [Bacillus amyloliquefaciens strain MN-13]
GTGGACCAAGTTTTACCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTAGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTCTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATAGAGATCGCCCTACAGTCGAC
GAACTGCTTGAAAAAATAGAAAAACCACAAAAAAGACTTACAGGCCTCTTGAAATATTACTCATTGTTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGAAGCGATAAGCTATTATCGCAAAGCAGAGAGAGAGTTGAATGCTGTATCAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTAAAAAAAGCCAAGCAATTGTTTGAAAAAAGTCAACTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAGGCAGAATCATATTATCGGGAAGCATTAAGTATCGCCCGTGGCTTGG
ATGAGGAAAAAGTGAAAAGAATTATCGGAGTGATCTTTCATAACTTAGGCTTAGTTTATTTAAGAGGGAAAAATTTGATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGAGTGAGATCATTATATAT
GATGGCGAATGTCCTGTACCAATGTGATAAAGCCAAGGAAGCACGTTTCTTTTATGAAACGGCTTTAAATCGTGCTCGGA
CTTCTAATGAAGAGGAATATTTGGCTAAATTAAAAATCATTAATTCATTGTACGAAGAATATAATGAAACAGAAGTGAAA
CAAAGCTTAGGTTACTTGGAAGAGAAACGCCTTTGGTCTGATTTCGCAGAGCTAACCGAAAAATTAGGTGACTTTCATTT
TGAGAAGAGAAACTATGCAGAGGGAAGAAACTTTTTAAAGAAAACCATACATGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATAA

Domains

Predicted by InterProScan.

• MalT-like TPR region (TPR_MalT) (145-296)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.534	99.202	0.372