Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   MNY35_RS07405 Genome accession   NZ_CP093298
Coordinates   1598330..1599046 (-) Length   238 a.a.
NCBI ID   WP_053573584.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MN-13     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1593330..1604046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY35_RS07390 (MNY35_07390) - 1595599..1596738 (+) 1140 WP_020955502.1 YibE/F family protein -
  MNY35_RS07395 (MNY35_07395) - 1596735..1597496 (+) 762 WP_007408500.1 YibE/F family protein -
  MNY35_RS07400 (MNY35_07400) - 1597532..1598197 (-) 666 WP_003155588.1 NAD(P)H-dependent oxidoreductase -
  MNY35_RS07405 (MNY35_07405) treR 1598330..1599046 (-) 717 WP_053573584.1 trehalose operon repressor Regulator
  MNY35_RS07410 (MNY35_07410) treC 1599068..1600753 (-) 1686 WP_062623282.1 alpha,alpha-phosphotrehalase -
  MNY35_RS07415 (MNY35_07415) treP 1600829..1602244 (-) 1416 WP_062623281.1 PTS system trehalose-specific EIIBC component -
  MNY35_RS07420 (MNY35_07420) - 1602515..1602775 (+) 261 WP_014417185.1 spore germination protein -
  MNY35_RS07425 (MNY35_07425) - 1602790..1603032 (+) 243 WP_003155595.1 spore germination protein -
  MNY35_RS07430 (MNY35_07430) - 1603048..1603479 (+) 432 WP_003155596.1 Hsp20/alpha crystallin family protein -
  MNY35_RS07435 (MNY35_07435) - 1603489..1603866 (-) 378 WP_003155597.1 DUF1992 domain-containing protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27461.46 Da        Isoelectric Point: 7.3204

>NTDB_id=571185 MNY35_RS07405 WP_053573584.1 1598330..1599046(-) (treR) [Bacillus amyloliquefaciens strain MN-13]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTTVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEQIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLDDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=571185 MNY35_RS07405 WP_053573584.1 1598330..1599046(-) (treR) [Bacillus amyloliquefaciens strain MN-13]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGACGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACAAATTATTTTGGACAAGGATTACTTTGTAAAAAAACATGTGCCTCTATTGACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
AGAGGACCGGAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGACGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424