Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   MNY35_RS02300 Genome accession   NZ_CP093298
Coordinates   522151..522771 (+) Length   206 a.a.
NCBI ID   WP_003154004.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MN-13     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 517151..527771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY35_RS02265 (MNY35_02265) - 517396..517569 (+) 174 WP_012117647.1 aspartyl-phosphate phosphatase Spo0E family protein -
  MNY35_RS02270 (MNY35_02270) - 517643..517861 (-) 219 WP_003153994.1 YneF family protein -
  MNY35_RS02275 (MNY35_02275) sirA 517947..518393 (-) 447 WP_003153995.1 sporulation inhibitor of replication protein SirA -
  MNY35_RS02280 (MNY35_02280) recP/tkt 518545..520548 (-) 2004 WP_007611727.1 transketolase Machinery gene
  MNY35_RS02285 (MNY35_02285) - 520715..520948 (-) 234 WP_003153997.1 DUF896 domain-containing protein -
  MNY35_RS02290 (MNY35_02290) - 521017..521667 (-) 651 WP_003153998.1 recombinase family protein -
  MNY35_RS02295 (MNY35_02295) yneA 521683..521994 (-) 312 WP_003154001.1 cell division suppressor protein YneA -
  MNY35_RS02300 (MNY35_02300) dinR/lexA 522151..522771 (+) 621 WP_003154004.1 transcriptional repressor LexA Regulator
  MNY35_RS02305 (MNY35_02305) - 523111..523539 (-) 429 WP_015417546.1 hypothetical protein -
  MNY35_RS02310 (MNY35_02310) - 523693..524142 (+) 450 WP_003154009.1 YndM family protein -
  MNY35_RS02315 (MNY35_02315) - 524170..525000 (-) 831 WP_007410333.1 prohibitin family protein -
  MNY35_RS02320 (MNY35_02320) - 524987..525136 (-) 150 WP_007410334.1 hypothetical protein -
  MNY35_RS02325 (MNY35_02325) - 525244..526065 (-) 822 WP_039251404.1 poly-gamma-glutamate hydrolase family protein -
  MNY35_RS02330 (MNY35_02330) - 526277..526384 (+) 108 Protein_463 DUF4177 domain-containing protein -
  MNY35_RS02335 (MNY35_02335) - 526473..526907 (-) 435 WP_003154017.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23055.65 Da        Isoelectric Point: 5.3816

>NTDB_id=571136 MNY35_RS02300 WP_003154004.1 522151..522771(+) (dinR/lexA) [Bacillus amyloliquefaciens strain MN-13]
MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEVLDEEEVHIPKSQ
VVNVPVIGKVTAGIPITAVENIDEYFPLPDRMVPPGEHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVVAMTED
DEATVKRFYKEDNYVRLQPENPTMEPIILQNVSILGKVIGVFRAVH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=571136 MNY35_RS02300 WP_003154004.1 522151..522771(+) (dinR/lexA) [Bacillus amyloliquefaciens strain MN-13]
ATGACGAAGCTATCAAAAAGGCAGCTTGATATCCTGCGTTTTATTAAAGAAGAGGTAAAAACGAAAGGATATCCGCCTTC
TGTAAGAGAGATAGGAGAAGCAGTAGGACTGGCTTCCAGTTCAACCGTGCACGGCCATTTGGCGCGGCTGGAGACAAAAG
GCCTGATCAGACGGGACCCAACTAAACCGAGGGCGATTGAGGTATTGGATGAAGAAGAAGTCCACATTCCGAAAAGCCAG
GTCGTAAACGTTCCGGTCATCGGGAAAGTGACGGCGGGTATTCCGATTACGGCTGTTGAAAATATCGACGAGTATTTTCC
GCTTCCTGACCGGATGGTTCCTCCGGGCGAACATGTCTTTATGTTAGAAATCATGGGAGAAAGTATGATCGACGCCGGTA
TTTTTGACAAAGATTACGTCATTGTCAAACAGCAGAACACGGCCAATAACGGAGAAATCGTCGTAGCTATGACCGAAGAT
GATGAAGCGACGGTCAAGCGCTTCTATAAAGAAGACAATTATGTGCGGCTGCAGCCGGAAAATCCGACGATGGAGCCGAT
TATCCTGCAAAACGTAAGCATTTTGGGGAAAGTTATCGGCGTATTCAGAGCCGTACATTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-199)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

92.718

100

0.927