Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   MNY35_RS00465 Genome accession   NZ_CP093298
Coordinates   132146..133636 (+) Length   496 a.a.
NCBI ID   WP_039254663.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MN-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 127146..138636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY35_RS00445 (MNY35_00445) serA 127798..129375 (-) 1578 WP_007409437.1 phosphoglycerate dehydrogenase -
  MNY35_RS00450 (MNY35_00450) - 129864..130436 (+) 573 WP_015417737.1 ECF transporter S component -
  MNY35_RS00455 (MNY35_00455) - 130578..130826 (-) 249 WP_003153403.1 ferredoxin -
  MNY35_RS00460 (MNY35_00460) - 131095..132153 (+) 1059 WP_040237977.1 helix-turn-helix domain-containing protein -
  MNY35_RS00465 (MNY35_00465) recS 132146..133636 (+) 1491 WP_039254663.1 ATP-dependent DNA helicase RecQ Machinery gene
  MNY35_RS00470 (MNY35_00470) - 133651..134238 (+) 588 WP_079891307.1 CPBP family intramembrane glutamic endopeptidase -
  MNY35_RS00475 (MNY35_00475) - 134216..134998 (+) 783 WP_039254669.1 LysM peptidoglycan-binding domain-containing protein -
  MNY35_RS00480 (MNY35_00480) - 135067..135525 (+) 459 WP_007409443.1 YpbF family protein -
  MNY35_RS00485 (MNY35_00485) - 135612..136400 (+) 789 WP_039254672.1 metallophosphoesterase -
  MNY35_RS00490 (MNY35_00490) - 136552..137136 (+) 585 WP_003153412.1 genetic competence negative regulator -
  MNY35_RS00495 (MNY35_00495) gudB 137297..138571 (+) 1275 WP_039254676.1 NAD-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55999.03 Da        Isoelectric Point: 6.2481

>NTDB_id=571130 MNY35_RS00465 WP_039254663.1 132146..133636(+) (recS) [Bacillus amyloliquefaciens strain MN-13]
MTELHKALSRYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNTEKISRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAVIRDAGTSDERKLRDVLINKGVQETQARTAVHLFLQGKTT
KDQLQEELTYRVEKKLRKMNRFSALLERKECIREALLSYFDEPYEPDGQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=571130 MNY35_RS00465 WP_039254663.1 132146..133636(+) (recS) [Bacillus amyloliquefaciens strain MN-13]
ATGACTGAGCTGCATAAAGCTTTATCCAGGTATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAAGATACGATCGCCATGCTTCCGACCGGCGGGGGAAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTGGTGCTGATTATTTCGCCGCTCCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAAGGA
GAAAAGCGGGTTGCTGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATCCTCAGCAACATCAGCCGGTATAA
ATTTCTCTATATGTCTCCTGAAGCCCTTTCTTCACCTTATGTGCTGAACCGTTTGAAAAATGTCCCGGTCAGTTTATTTG
TTATTGATGAGGCTCATTGCATATCAGAATGGGGACATGATTTCAGGCCTGATTACTCGAAGCTCGGGCCTTTCAGGCAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTGACCGCAACAGCGACAAAAGAAACGCTCAGAGACGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGTCATCTTTATTCAGTCAACCGGCCGAACATTCTCCTGGCGGCAGAACATTTGGCTGATAATA
CCGAAAAAATAAGCAGGCTCACGGAGCTTGCCGAAAAGCTTGAAGGCCCGGGTATCATATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAACGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGAATGGATACAGGCGA
CAGGATTTTAATCCAGCAGCAATTTATCCATAACCAGCTTGATTGCATCTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGCCTGTCTGATTATGACCTGGAAGGCATTCTGGCCGTCATACGGGATGCCGGTACGAGTGATGAACGAAAGCTTC
GGGACGTTCTGATCAATAAGGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTTTCTGCAAGGAAAAACCACA
AAAGACCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAGAAGCTGCGTAAAATGAATCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAGAAGCGCTGCTGTCTTATTTTGATGAACCGTATGAGCCTGATGGTCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGTAAAAATATGGAACGGTTTGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGATCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-178)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

68.347

100

0.683