Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KLF31_RS11940 Genome accession   NZ_CP075966
Coordinates   2653292..2654677 (-) Length   461 a.a.
NCBI ID   WP_003452246.1    Uniprot ID   -
Organism   Clostridium perfringens strain 318/86     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2648292..2659677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KLF31_RS11920 (KLF31_11900) ispD 2649664..2650341 (-) 678 WP_115650530.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  KLF31_RS11925 (KLF31_11905) - 2650355..2651461 (-) 1107 WP_011593148.1 PIN/TRAM domain-containing protein -
  KLF31_RS11930 (KLF31_11910) - 2651773..2652174 (+) 402 WP_111916649.1 DUF1573 domain-containing protein -
  KLF31_RS11935 (KLF31_11915) disA 2652208..2653272 (-) 1065 WP_011593150.1 DNA integrity scanning diadenylate cyclase DisA -
  KLF31_RS11940 (KLF31_11920) radA 2653292..2654677 (-) 1386 WP_003452246.1 DNA repair protein RadA Machinery gene
  KLF31_RS11945 (KLF31_11925) nagB 2654904..2655632 (-) 729 WP_115650404.1 glucosamine-6-phosphate deaminase -
  KLF31_RS11950 (KLF31_11930) - 2655629..2656351 (-) 723 WP_111916647.1 GntR family transcriptional regulator -
  KLF31_RS11955 (KLF31_11935) - 2656551..2656715 (+) 165 WP_164801785.1 hypothetical protein -
  KLF31_RS11960 (KLF31_11940) - 2656809..2657036 (+) 228 WP_011593154.1 glutaredoxin family protein -
  KLF31_RS11965 (KLF31_11945) - 2657159..2658607 (-) 1449 WP_224374479.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase -
  KLF31_RS11970 (KLF31_11950) - 2658624..2658857 (-) 234 WP_003452243.1 glutaredoxin family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50731.69 Da        Isoelectric Point: 8.1872

>NTDB_id=571112 KLF31_RS11940 WP_003452246.1 2653292..2654677(-) (radA) [Clostridium perfringens strain 318/86]
MKKYGVGKVAKVRSIYVCQNCGYETPKWMGKCPECNNWNTLVEEIRDTKSNQSSPKVERQIGELKKIKEIKSGEKERYDT
GIGELNRVLGGGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRGDRLKVDAEELYIVSETN
LDVIEAYIDKLEPAFIIIDSIQTIYRETVSSAPGSVSQVKECSNAVMRIAKGKNIPLFIVAHVTKQGDLAGPRVLEHMVD
TVLSFEGERTEEFRILRTMKNRFGTTAEIGVFEMRGEGLIQVYDPSSMFLEDTSFNQEGSVVIGVMEGTRPILVEIQSLA
SETKAVMPRRTSVGVENSRLSLILAVLEKKLRVPFYNTDVYVNVVGGLEIEGTTADLGIAISLVSSVKGKAARLEKLVVV
GEVGLTGEIRPISNCDRILNEAEKMGFLNAVVPYRSLEKLKGSKLNLIGVKTVREAIGKIF

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=571112 KLF31_RS11940 WP_003452246.1 2653292..2654677(-) (radA) [Clostridium perfringens strain 318/86]
ATGAAGAAATATGGAGTTGGTAAAGTGGCAAAGGTTAGAAGCATATATGTATGTCAAAATTGTGGATATGAAACACCTAA
ATGGATGGGTAAATGTCCAGAATGTAATAATTGGAATACTTTAGTTGAAGAGATTAGAGATACTAAGAGTAATCAATCTT
CTCCTAAGGTTGAAAGACAAATTGGTGAGCTTAAAAAGATAAAAGAAATTAAATCAGGTGAAAAGGAAAGATATGATACT
GGAATTGGTGAATTAAATAGAGTATTAGGTGGAGGGCTTGTTAAGGGATCGCTTACACTTATATCTGGTGACCCTGGAAT
AGGTAAATCTACACTTCTTTTACAAACAGCCAATAATATTTCAAAAAAATATGGGAAAGTTTTATATGTTTCTGGAGAAG
AATCAGAAGAACAAATAAAAATAAGAGGAGACAGATTAAAAGTTGATGCAGAAGAACTTTATATAGTTTCCGAAACTAAT
CTTGATGTAATAGAAGCATATATAGATAAACTTGAACCAGCTTTCATAATAATAGATTCAATACAAACAATTTATAGAGA
AACAGTTTCTTCAGCACCAGGAAGTGTTTCACAGGTTAAAGAATGCTCAAACGCTGTAATGAGAATTGCTAAAGGAAAAA
ATATTCCTTTATTTATAGTTGCTCATGTTACTAAGCAAGGAGATTTAGCTGGACCAAGAGTATTAGAACACATGGTGGAT
ACAGTATTATCCTTTGAAGGGGAAAGAACTGAAGAATTTAGAATATTAAGAACCATGAAAAATAGATTTGGTACTACGGC
TGAAATAGGTGTTTTTGAAATGCGTGGAGAGGGATTAATTCAGGTTTATGATCCATCTAGCATGTTCTTAGAGGACACTA
GTTTTAATCAAGAAGGGTCAGTTGTAATTGGAGTCATGGAAGGAACTAGACCTATTCTTGTGGAAATACAATCATTAGCA
TCTGAAACAAAAGCAGTTATGCCTAGAAGAACCTCTGTAGGAGTAGAAAATTCAAGGTTAAGTTTAATATTAGCTGTATT
AGAAAAGAAATTAAGAGTTCCTTTTTATAATACTGATGTTTATGTAAATGTAGTAGGAGGACTTGAAATAGAAGGTACTA
CAGCAGACTTAGGAATTGCCATTTCACTTGTATCCTCTGTTAAAGGTAAGGCAGCTAGATTAGAAAAATTAGTTGTTGTA
GGCGAGGTTGGGTTAACAGGTGAAATAAGACCAATATCAAATTGTGACAGAATATTAAATGAAGCAGAAAAAATGGGATT
TTTAAATGCAGTTGTTCCTTATAGAAGTTTAGAAAAACTAAAGGGAAGTAAATTAAATCTTATAGGAGTAAAAACTGTAA
GGGAAGCAATAGGAAAGATATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(351-434)

AAA domain (AAA_25)

(78-228)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.89

98.265

0.49
  radA Streptococcus pneumoniae Rx1

47.357

98.482

0.466
  radA Streptococcus pneumoniae D39

47.357

98.482

0.466
  radA Streptococcus pneumoniae R6

47.357

98.482

0.466
  radA Streptococcus pneumoniae TIGR4

47.357

98.482

0.466
  radA Streptococcus mitis SK321

47.137

98.482

0.464
  radA Streptococcus mitis NCTC 12261

47.137

98.482

0.464