Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KLF38_RS12255 Genome accession   NZ_CP075961
Coordinates   2702569..2703930 (-) Length   453 a.a.
NCBI ID   WP_115650403.1    Uniprot ID   -
Organism   Clostridium perfringens strain 497/86     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2697569..2708930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KLF38_RS12235 (KLF38_12195) ispD 2698941..2699618 (-) 678 WP_115650530.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  KLF38_RS12240 (KLF38_12200) - 2699632..2700738 (-) 1107 WP_011593148.1 PIN/TRAM domain-containing protein -
  KLF38_RS12245 (KLF38_12205) - 2701050..2701451 (+) 402 WP_111916649.1 DUF1573 domain-containing protein -
  KLF38_RS12250 (KLF38_12210) disA 2701485..2702549 (-) 1065 WP_011593150.1 DNA integrity scanning diadenylate cyclase DisA -
  KLF38_RS12255 (KLF38_12215) radA 2702569..2703930 (-) 1362 WP_115650403.1 DNA repair protein RadA Machinery gene
  KLF38_RS12260 (KLF38_12220) nagB 2704181..2704909 (-) 729 WP_115650404.1 glucosamine-6-phosphate deaminase -
  KLF38_RS12265 (KLF38_12225) - 2704906..2705628 (-) 723 WP_111916647.1 GntR family transcriptional regulator -
  KLF38_RS12270 (KLF38_12230) - 2705828..2705992 (+) 165 WP_164801785.1 hypothetical protein -
  KLF38_RS12275 (KLF38_12235) - 2706086..2706313 (+) 228 WP_011593154.1 glutaredoxin family protein -
  KLF38_RS12280 (KLF38_12240) - 2706436..2707884 (-) 1449 WP_224382638.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase -
  KLF38_RS12285 (KLF38_12245) - 2707901..2708134 (-) 234 WP_003452243.1 glutaredoxin family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49841.59 Da        Isoelectric Point: 7.0588

>NTDB_id=571079 KLF38_RS12255 WP_115650403.1 2702569..2703930(-) (radA) [Clostridium perfringens strain 497/86]
MAKVRSIYVCQNCGYETPKWMGKCPECNNWNTLVEEIRDAKSNQSSPKVERQIGELKKIKEIKSGEKERYDTGIGELNRV
LGGGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRGDRLKVDAEELYIVSETNLDVIEAYI
DKLEPAFIIIDSIQTIYRETVSSAPGSVSQVKECSNAVMRIAKGKNIPLFIVAHVTKQGDLAGPRVLEHMVDTVLSFEGE
RTEEFRILRTMKNRFGTTAEIGVFEMRGEGLIQVYDPSSMFLEDTSFNQEGSVVIGVMEGTRPILVEIQSLASETKAVMP
RRTSVGVENSRLSLILAVLEKKLRVPFYNTDVYVNVVGGLEIEGTTADLGIAISLVSSVKGKAARLEKLVVVGEVGLTGE
IRPISNCDRILNEAEKMGFLNAVVPYRSLEKLKGSKLNLIGVKTVREAIGKIF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=571079 KLF38_RS12255 WP_115650403.1 2702569..2703930(-) (radA) [Clostridium perfringens strain 497/86]
GTGGCAAAGGTTAGAAGCATATATGTATGTCAAAATTGTGGATATGAAACACCTAAATGGATGGGTAAATGTCCAGAATG
TAATAATTGGAATACTTTAGTTGAAGAGATTAGAGATGCTAAGAGTAATCAATCTTCTCCTAAGGTTGAAAGACAAATTG
GTGAGCTTAAAAAGATAAAAGAAATTAAATCAGGTGAAAAGGAAAGATATGATACTGGAATTGGTGAATTAAATAGAGTA
TTAGGTGGAGGGCTTGTTAAGGGATCGCTTACACTTATATCTGGTGACCCTGGAATAGGTAAATCTACACTTCTTTTACA
AACAGCCAATAATATTTCAAAAAAATATGGGAAAGTTTTATATGTTTCTGGAGAAGAATCAGAAGAACAAATAAAAATAA
GAGGAGACAGATTAAAAGTTGATGCAGAAGAACTTTATATAGTTTCCGAAACTAATCTTGATGTAATAGAAGCATATATA
GATAAACTTGAACCAGCTTTCATAATAATAGATTCAATACAAACAATTTATAGAGAAACAGTTTCTTCAGCACCAGGAAG
TGTTTCACAGGTTAAAGAATGCTCAAACGCTGTAATGAGAATTGCTAAAGGAAAAAATATTCCTTTATTTATAGTTGCTC
ATGTTACTAAGCAAGGAGATTTAGCTGGACCAAGAGTATTAGAACACATGGTGGATACAGTATTATCCTTTGAAGGGGAA
AGAACTGAAGAATTTAGAATATTAAGAACCATGAAAAATAGATTTGGTACTACGGCTGAAATAGGTGTTTTTGAAATGCG
TGGAGAGGGATTAATTCAGGTTTATGATCCATCTAGCATGTTCTTAGAGGACACTAGTTTTAATCAAGAAGGGTCAGTTG
TAATTGGAGTCATGGAAGGAACTAGACCTATTCTTGTGGAAATACAATCATTAGCATCTGAAACAAAAGCAGTTATGCCT
AGAAGAACCTCTGTAGGAGTAGAAAATTCAAGGTTAAGTTTAATATTAGCTGTATTAGAAAAGAAATTAAGAGTTCCTTT
TTATAATACTGATGTTTATGTAAATGTAGTAGGAGGACTTGAAATAGAAGGTACTACAGCAGACTTAGGAATTGCCATTT
CACTTGTATCCTCTGTTAAAGGTAAGGCAGCTAGATTAGAAAAATTAGTTGTTGTAGGCGAGGTTGGGTTAACAGGTGAA
ATAAGACCAATATCAAATTGTGACAGAATATTAAATGAAGCAGAAAAAATGGGATTTTTAAATGCAGTTGTTCCTTATAG
AAGTTTAGAAAAACTAAAGGGAAGTAAATTAAATCTTATAGGAGTAAAAACTGTAAGGGAAGCAATAGGAAAGATATTTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-426)

AAA domain (AAA_25)

(70-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.331

100

0.503
  radA Streptococcus pneumoniae Rx1

47.797

100

0.479
  radA Streptococcus pneumoniae D39

47.797

100

0.479
  radA Streptococcus pneumoniae R6

47.797

100

0.479
  radA Streptococcus pneumoniae TIGR4

47.797

100

0.479
  radA Streptococcus mitis SK321

47.577

100

0.477
  radA Streptococcus mitis NCTC 12261

47.577

100

0.477