Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KLF38_RS08310 Genome accession   NZ_CP075961
Coordinates   1879863..1880921 (-) Length   352 a.a.
NCBI ID   WP_115650087.1    Uniprot ID   -
Organism   Clostridium perfringens strain 497/86     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1874863..1885921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KLF38_RS08290 (KLF38_08245) - 1875803..1876063 (-) 261 WP_003459789.1 HPr family phosphocarrier protein -
  KLF38_RS08295 (KLF38_08250) - 1876158..1877351 (-) 1194 WP_115650085.1 pyridoxal phosphate-dependent aminotransferase -
  KLF38_RS08300 (KLF38_08255) - 1877503..1877763 (-) 261 WP_003459803.1 stage V sporulation protein S -
  KLF38_RS08305 (KLF38_08260) rny 1877980..1879515 (-) 1536 WP_224382507.1 ribonuclease Y -
  KLF38_RS08310 (KLF38_08265) recA 1879863..1880921 (-) 1059 WP_115650087.1 recombinase RecA Machinery gene
  KLF38_RS08315 (KLF38_08270) pgsA 1881057..1881647 (-) 591 WP_003469140.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KLF38_RS08320 (KLF38_08275) rimO 1881631..1882968 (-) 1338 WP_164801959.1 30S ribosomal protein S12 methylthiotransferase RimO -
  KLF38_RS08325 (KLF38_08280) - 1883037..1885427 (-) 2391 WP_224374251.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37956.43 Da        Isoelectric Point: 5.3438

>NTDB_id=571072 KLF38_RS08310 WP_115650087.1 1879863..1880921(-) (recA) [Clostridium perfringens strain 497/86]
MANIDKDKLKAIEMAMGQIEKQFGKGSVMKLGEQGAPQMDAVSTGCLDLDIALGIGGVPKGRIIEIYGPESSGKTTVALH
VVAEAQKLGGAAAYIDAEHALDPVYAKRLGVNIDDLVVSQPDTGEQALEITEALVRSGAIDVLVVDSVAALVPRAEIEGE
MGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGIT
GNRTRVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGRENAKQYLKDNPSVALD
IENQIREKYSLPLAKAVESTSVEKNTEESVES

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=571072 KLF38_RS08310 WP_115650087.1 1879863..1880921(-) (recA) [Clostridium perfringens strain 497/86]
ATGGCAAATATAGATAAAGATAAATTAAAAGCTATTGAGATGGCTATGGGTCAAATAGAGAAGCAATTTGGAAAGGGATC
AGTAATGAAACTTGGAGAGCAAGGAGCTCCTCAAATGGATGCTGTTTCTACTGGATGCTTAGATCTTGATATAGCTTTAG
GAATTGGTGGAGTACCAAAAGGAAGAATTATTGAGATATATGGACCAGAGAGTTCTGGTAAAACAACAGTGGCTTTACAT
GTAGTAGCAGAGGCACAAAAATTAGGTGGAGCAGCAGCGTATATAGATGCAGAGCATGCTTTAGATCCAGTTTATGCAAA
AAGATTAGGTGTTAATATAGATGATTTAGTAGTTTCACAACCAGATACAGGAGAACAAGCTTTAGAAATAACAGAAGCTT
TAGTTAGATCAGGAGCTATAGATGTTTTAGTTGTGGACTCAGTTGCCGCTTTAGTTCCAAGAGCAGAAATTGAAGGTGAA
ATGGGAGATTCTCACGTTGGTCTTCAAGCTAGATTAATGTCACAGGCCTTAAGAAAGTTAACAGGAACAATTAACAAATC
AAACTGCGTAGTAATATTCATAAACCAATTAAGAGAAAAAGTTGGTATAATGTTTGGTAATCCAGAGACAACACCAGGTG
GTAGAGCGTTAAAATTCTATGCTTCAGTTAGAATGGATATAAGAAGAATAGATTCAATAAAACAAGGTGATGGAATAACA
GGTAATAGAACAAGAGTTAAAATAGTTAAGAATAAGGTTGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTACAA
TGAAGGTATATCAAAAGAAGGTAATATAGTAGACGTTGGAGTAAAAGAAAATATAGTGCAAAAAAGTGGAGCTTGGTTCT
CATATGGAGATATAAGATTAGGCCAAGGTAGAGAAAATGCTAAACAATATTTAAAAGATAATCCATCAGTTGCTTTAGAT
ATAGAAAATCAAATAAGAGAAAAATATTCTCTTCCTTTAGCTAAGGCTGTTGAATCAACAAGTGTAGAAAAAAATACAGA
AGAGTCTGTTGAAAGTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

71.077

92.33

0.656
  recA Acinetobacter baylyi ADP1

63.188

98.011

0.619
  recA Helicobacter pylori 26695

66.462

92.33

0.614
  recA Helicobacter pylori strain NCTC11637

66.462

92.33

0.614
  recA Latilactobacillus sakei subsp. sakei 23K

66.978

91.193

0.611
  recA Streptococcus mutans UA159

60.969

99.716

0.608
  recA Pseudomonas stutzeri DSM 10701

65.538

92.33

0.605
  recA Streptococcus pneumoniae D39

60.983

98.295

0.599
  recA Streptococcus pneumoniae R6

60.983

98.295

0.599
  recA Streptococcus pneumoniae TIGR4

60.983

98.295

0.599
  recA Streptococcus pneumoniae Rx1

60.983

98.295

0.599
  recA Streptococcus mitis SK321

64.724

92.614

0.599
  recA Acinetobacter baumannii D1279779

64.923

92.33

0.599
  recA Ralstonia pseudosolanacearum GMI1000

64.329

93.182

0.599
  recA Glaesserella parasuis strain SC1401

61.047

97.727

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.83

93.466

0.597
  recA Vibrio cholerae strain A1552

63.83

93.466

0.597
  recA Streptococcus mitis NCTC 12261

64.417

92.614

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.506

92.045

0.594
  recA Streptococcus pyogenes NZ131

63.914

92.898

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

93.182

0.588
  recA Neisseria gonorrhoeae strain FA1090

64.486

91.193

0.588
  recA Neisseria gonorrhoeae MS11

64.486

91.193

0.588
  recA Neisseria gonorrhoeae MS11

64.486

91.193

0.588
  recA Lactococcus lactis subsp. cremoris KW2

62.883

92.614

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.802

92.045

0.56