Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   MNG38_RS11765 Genome accession   NZ_CP093289
Coordinates   2306928..2308418 (-) Length   496 a.a.
NCBI ID   WP_242139141.1    Uniprot ID   -
Organism   Bacillus subtilis strain H2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2301928..2313418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNG38_RS11735 (MNG38_11735) gudB 2302075..2303349 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  MNG38_RS11740 (MNG38_11740) mecB 2303505..2304089 (-) 585 WP_003230533.1 genetic competence negative regulator -
  MNG38_RS11745 (MNG38_11745) ypbG 2304248..2305027 (-) 780 WP_015251802.1 metallophosphoesterase -
  MNG38_RS11750 (MNG38_11750) ypbF 2305114..2305557 (-) 444 WP_003230531.1 YpbF family protein -
  MNG38_RS11755 (MNG38_11755) claE 2305620..2306348 (-) 729 WP_114523461.1 LysM peptidoglycan-binding domain-containing protein -
  MNG38_RS11760 (MNG38_11760) ypbD 2306299..2306886 (-) 588 WP_283933531.1 CPBP family intramembrane glutamic endopeptidase -
  MNG38_RS11765 (MNG38_11765) recS 2306928..2308418 (-) 1491 WP_242139141.1 ATP-dependent DNA helicase RecQ Machinery gene
  MNG38_RS11770 (MNG38_11770) gmmB 2308411..2309469 (-) 1059 WP_004398594.1 helix-turn-helix domain-containing protein -
  MNG38_RS11775 (MNG38_11775) fdxA 2309735..2309983 (+) 249 WP_003225461.1 ferredoxin -
  MNG38_RS11780 (MNG38_11780) fmnP 2310023..2310595 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  MNG38_RS11785 (MNG38_11785) serA 2311092..2312669 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56480.05 Da        Isoelectric Point: 6.6626

>NTDB_id=570919 MNG38_RS11765 WP_242139141.1 2306928..2308418(-) (recS) [Bacillus subtilis strain H2]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGKIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRASFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=570919 MNG38_RS11765 WP_242139141.1 2306928..2308418(-) (recS) [Bacillus subtilis strain H2]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTAAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTTC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGGAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGCATCATTTTTGCTTCA
GCGTGATGGCTGTTTAAGGCAGGCACTATTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.395

100

0.994