Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KKI46_RS04955 Genome accession   NZ_CP075897
Coordinates   957232..958938 (+) Length   568 a.a.
NCBI ID   WP_047396479.1    Uniprot ID   -
Organism   Exiguobacterium acetylicum strain SI17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 952232..963938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKI46_RS04930 (KKI46_04930) xseB 952711..952932 (+) 222 WP_023467583.1 exodeoxyribonuclease VII small subunit -
  KKI46_RS04935 (KKI46_04935) - 952929..953798 (+) 870 WP_029341097.1 polyprenyl synthetase family protein -
  KKI46_RS04940 (KKI46_04940) dxs 953916..955802 (+) 1887 WP_047396476.1 1-deoxy-D-xylulose-5-phosphate synthase -
  KKI46_RS04945 (KKI46_04945) - 955809..956615 (+) 807 WP_029341099.1 TlyA family RNA methyltransferase -
  KKI46_RS04950 (KKI46_04950) argR 956770..957219 (+) 450 WP_023467586.1 transcriptional regulator ArgR -
  KKI46_RS04955 (KKI46_04955) recN 957232..958938 (+) 1707 WP_047396479.1 DNA repair protein RecN Machinery gene
  KKI46_RS04960 (KKI46_04960) spo0A 958942..959664 (+) 723 WP_035398295.1 sporulation transcription factor Spo0A -
  KKI46_RS04965 (KKI46_04965) - 959723..961060 (-) 1338 Protein_916 IS3 family transposase -
  KKI46_RS04970 (KKI46_04970) - 961134..961712 (-) 579 WP_029341106.1 dihydrofolate reductase family protein -
  KKI46_RS04975 (KKI46_04975) - 962388..962642 (-) 255 WP_023467590.1 DUF2627 family protein -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64060.61 Da        Isoelectric Point: 4.6196

>NTDB_id=570786 KKI46_RS04955 WP_047396479.1 957232..958938(+) (recN) [Exiguobacterium acetylicum strain SI17]
MLAELSIKQFAIIDELQIDFKKGMTVLTGETGAGKSIVLDAIGLLIGGRGSAEFVRYGEDRAELEGLFLIEDDHLVYGLA
EEYGIDIEDGLIILRRDLFATGKSVCRVNNKLVTLTILREFGRVLVDMHGQHEHQHLMDSTYHQAILDDFAQEAIAPLLQ
AYQSGYQAYEEKRTALQSLAQSEQELAQRIDLLSFQTEEIEGAKLRAHEEDELLVERNRLANFEKLYASLKTAYDALHDE
MRGIDSVGDAMRELQQASSIDEQFSQQSDAIASAFYGLEEVGYAIRDQLETLEFDSNRLDEIEQRLSVFQQLKRKYGATI
EEVIAYGEKIRVELDTMTNRDERIERLKAEVEQLEGELFDIGGRLSQQRRKAAVQLSEAIHLELRELYMEKARFEIRFLQ
DGKTPMLRKNGIDQVEFFIMTNAGEPFKSLGKVASGGELSRIMLGLKSIFSRSVGVASIIFDEVDTGVSGRVAQAMAEKI
YRLSVDGQVLCITHLPQVASMADQHLYIRKIEETDRTTTQVNVLSQSDRGNELGRMISGAHMTDLTLRHAEELMDQAKTM
KESLKNGV

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=570786 KKI46_RS04955 WP_047396479.1 957232..958938(+) (recN) [Exiguobacterium acetylicum strain SI17]
ATGCTAGCTGAATTATCGATCAAACAATTTGCGATCATTGACGAGCTACAGATCGACTTTAAAAAAGGAATGACCGTCTT
GACTGGGGAAACAGGTGCCGGTAAATCGATCGTTCTCGACGCGATCGGTTTATTGATTGGTGGACGTGGATCCGCGGAAT
TCGTTCGATACGGGGAAGATCGGGCGGAACTAGAAGGATTGTTTCTGATTGAAGACGACCATCTCGTCTATGGTCTTGCA
GAAGAGTATGGTATCGATATCGAAGATGGATTGATCATCTTACGACGTGATCTGTTCGCGACCGGGAAAAGTGTCTGTCG
CGTCAACAATAAGCTGGTCACACTGACGATCTTACGTGAGTTCGGGCGTGTCCTCGTCGACATGCACGGGCAACATGAAC
ATCAGCATTTAATGGACAGTACGTATCATCAAGCGATTCTCGATGACTTCGCGCAAGAGGCAATCGCACCGCTTCTTCAA
GCCTACCAGTCCGGTTACCAAGCGTATGAAGAAAAACGGACGGCTTTGCAATCGCTCGCGCAAAGTGAGCAAGAACTCGC
TCAACGGATCGATTTACTATCTTTTCAGACGGAAGAGATTGAAGGCGCAAAACTTCGAGCACACGAGGAAGATGAGTTGC
TCGTTGAACGGAATCGTCTCGCGAATTTCGAAAAGCTATATGCGTCGTTAAAGACAGCGTATGATGCTTTACACGATGAG
ATGCGCGGCATCGATTCTGTTGGAGACGCGATGCGTGAACTACAGCAAGCATCAAGCATCGATGAACAGTTTTCGCAGCA
GAGTGACGCGATCGCAAGCGCTTTTTATGGACTGGAAGAAGTCGGATATGCGATTCGAGATCAACTCGAAACACTTGAGT
TTGATTCCAATCGACTCGATGAGATCGAACAACGTCTATCGGTCTTTCAACAGCTGAAACGAAAATACGGGGCGACAATC
GAGGAAGTCATCGCGTATGGGGAGAAGATTCGAGTTGAACTCGATACGATGACGAATCGAGATGAACGGATTGAACGATT
AAAAGCTGAAGTCGAACAGCTCGAAGGCGAATTGTTTGATATAGGTGGTCGACTCTCGCAACAGCGTCGAAAAGCGGCAG
TTCAATTAAGCGAAGCGATTCATCTGGAATTGCGTGAGCTCTACATGGAGAAAGCACGGTTTGAAATTCGTTTTCTTCAA
GACGGGAAGACACCGATGCTACGCAAGAACGGGATCGACCAAGTCGAGTTCTTCATCATGACGAATGCGGGAGAGCCATT
CAAGTCGCTCGGAAAAGTCGCATCGGGCGGGGAGTTATCTCGTATCATGCTCGGATTGAAGTCAATCTTCTCGCGCTCGG
TTGGAGTCGCTTCGATCATTTTCGATGAAGTCGATACAGGAGTATCGGGTCGTGTCGCACAAGCGATGGCTGAAAAAATC
TATCGTTTGTCAGTAGACGGACAAGTACTCTGTATTACGCACTTACCGCAAGTCGCTTCGATGGCTGATCAACATCTCTA
TATTCGGAAGATTGAAGAGACGGATCGTACGACGACACAGGTCAATGTCTTGTCTCAGTCAGACCGAGGAAACGAACTTG
GACGGATGATTTCCGGTGCACATATGACGGATTTGACGTTACGCCATGCCGAGGAATTGATGGATCAGGCGAAGACGATG
AAAGAATCGCTTAAAAATGGGGTGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.229

100

0.537