Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KJW29_RS26305 Genome accession   NZ_CP075889
Coordinates   6567316..6568272 (+) Length   318 a.a.
NCBI ID   WP_214626870.1    Uniprot ID   -
Organism   Paenibacillus agaridevorans strain HCL2020     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6562316..6573272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJW29_RS26285 - 6562744..6563760 (+) 1017 WP_214626866.1 sugar kinase -
  KJW29_RS26290 - 6563760..6564485 (+) 726 WP_214626867.1 GntR family transcriptional regulator -
  KJW29_RS26295 - 6564509..6565375 (-) 867 WP_214626868.1 serine protease -
  KJW29_RS26300 - 6565493..6567028 (+) 1536 WP_214626869.1 AraC family transcriptional regulator -
  KJW29_RS36565 - 6567174..6567305 (+) 132 WP_281426294.1 hypothetical protein -
  KJW29_RS26305 ceuB 6567316..6568272 (+) 957 WP_214626870.1 ABC transporter permease Machinery gene
  KJW29_RS26310 - 6568259..6569215 (+) 957 WP_214626871.1 iron chelate uptake ABC transporter family permease subunit -
  KJW29_RS26315 - 6569212..6569973 (+) 762 WP_108991253.1 ABC transporter ATP-binding protein -
  KJW29_RS26320 - 6570120..6571181 (+) 1062 WP_214631332.1 siderophore ABC transporter substrate-binding protein -
  KJW29_RS26325 - 6571336..6573027 (-) 1692 WP_246608391.1 alkaline phosphatase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34619.73 Da        Isoelectric Point: 9.6668

>NTDB_id=570732 KJW29_RS26305 WP_214626870.1 6567316..6568272(+) (ceuB) [Paenibacillus agaridevorans strain HCL2020]
MRLWIVIVAAVLLSFVSLFLGAIDIKISDLINGDTDKIDIFLVSRVPRLMAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNVTYTQQILFSFAFALAGTFVFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFFAYEADLL
QNISAWLMGSFTLVISGRYELLYISVPALVLAYLYANKFTVAGMGEDFAKNLGLSYKAVMNIGLVLVAIISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAAMGVVFLLVCDIIGRIVIYPYEIPVNVTVAVIGSAIFLVMLIRGRAYAKK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=570732 KJW29_RS26305 WP_214626870.1 6567316..6568272(+) (ceuB) [Paenibacillus agaridevorans strain HCL2020]
ATGAGACTATGGATTGTCATTGTCGCCGCGGTCTTGCTGTCCTTCGTATCCTTATTTCTCGGCGCTATCGATATTAAGAT
TAGCGATCTTATCAATGGAGATACAGATAAGATCGATATTTTCTTAGTTAGCCGGGTGCCTCGTTTGATGGCCATTATTT
TGGCTGGAGCCGGCATGAGCATAGCGGGCTTGATTATGCAGTCCTTGAGCCGCAATAAGTTCGTATCTCCTACGACTGCA
GGCACATTAGATGCAGCCAAGCTAGGTATTTTAATATCCATGCTGTTTTTTACGAATGTCACCTACACGCAGCAGATTTT
ATTTTCATTTGCATTTGCTTTGGCGGGAACCTTCGTCTTTATGCAGATCCTGGATCGAATTAAATTCAAGGATGTCATAT
TCGTTCCGCTCATTGGCATTATGTACGGGAATATATTATCGTCCATCACGACGTTTTTCGCTTACGAGGCCGATCTTCTC
CAAAATATTTCGGCTTGGCTGATGGGCAGCTTTACCCTTGTTATTTCCGGCCGATATGAGCTGTTATATATAAGTGTTCC
AGCTCTTGTTCTAGCTTATCTGTATGCGAACAAGTTTACGGTAGCGGGCATGGGCGAGGATTTCGCAAAAAACTTGGGCT
TAAGCTACAAGGCAGTCATGAACATTGGTCTTGTATTAGTGGCCATCATCTCCACAACGGTGGTGCTGACTGTCGGAGTT
ATTCCGTTCCTGGGTTTGATCGTTCCGAACATTGTGTCGCTCTATCTAGGCGATAACTTGCGCAAAACGATCCCCCACAC
TGCGGCGATGGGCGTCGTTTTTCTGCTCGTTTGCGATATTATCGGGCGGATCGTGATCTATCCTTACGAAATTCCGGTTA
ATGTAACGGTTGCGGTGATTGGCAGTGCGATCTTCTTAGTGATGTTGATTAGGGGGAGAGCGTATGCCAAAAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.165

99.371

0.528