Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MM431_RS09010 Genome accession   NZ_CP093068
Coordinates   1899178..1900602 (-) Length   474 a.a.
NCBI ID   WP_053880653.1    Uniprot ID   -
Organism   Escherichia coli strain BR1220     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1894178..1905602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM431_RS08980 (MM431_08980) yeeZ 1894233..1895057 (+) 825 WP_077513715.1 SDR family oxidoreductase -
  MM431_RS08985 (MM431_08985) yeeY 1895103..1896032 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  MM431_RS08990 (MM431_08990) yoeI 1896247..1896309 (+) 63 WP_010723108.1 membrane protein YoeI -
  MM431_RS08995 (MM431_08995) plaP 1896299..1897657 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  MM431_RS09000 (MM431_09000) tsuA 1897836..1898894 (+) 1059 WP_000492309.1 thiosulfate utilization transporter TsuA/YeeE -
  MM431_RS09005 (MM431_09005) tsuB 1898908..1899135 (+) 228 WP_000234896.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  MM431_RS09010 (MM431_09010) sbcB 1899178..1900602 (-) 1425 WP_053880653.1 exodeoxyribonuclease I Machinery gene
  MM431_RS09015 (MM431_09015) - 1900784..1901962 (+) 1179 WP_001007954.1 site-specific integrase -
  MM431_RS09020 (MM431_09020) - 1901943..1902134 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  MM431_RS09025 (MM431_09025) - 1902239..1902418 (-) 180 WP_001277767.1 Eag protein -
  MM431_RS09030 (MM431_09030) - 1902515..1902691 (-) 177 WP_348523896.1 DUF551 domain-containing protein -
  MM431_RS09035 (MM431_09035) - 1902935..1903042 (-) 108 Protein_1784 Eaa protein -
  MM431_RS09040 (MM431_09040) - 1903736..1903914 (-) 179 Protein_1785 hypothetical protein -
  MM431_RS09045 (MM431_09045) - 1903916..1904104 (-) 189 WP_000797279.1 hypothetical protein -
  MM431_RS09050 (MM431_09050) - 1904450..1904974 (-) 525 WP_241468756.1 ead/Ea22-like family protein -
  MM431_RS09055 (MM431_09055) - 1904976..1905275 (-) 300 WP_000118152.1 hypothetical protein -
  MM431_RS09060 (MM431_09060) - 1905272..1905439 (-) 168 WP_016063110.1 DUF2737 family protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54397.67 Da        Isoelectric Point: 5.3476

>NTDB_id=570538 MM431_RS09010 WP_053880653.1 1899178..1900602(-) (sbcB) [Escherichia coli strain BR1220]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=570538 MM431_RS09010 WP_053880653.1 1899178..1900602(-) (sbcB) [Escherichia coli strain BR1220]
ATGACAGACACAGATAAGCAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGAGAACCCGAAGTCTTTTACTGCAAGCCCGCTG
ATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAACGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAATATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.362

99.156

0.589