Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CPZ02_RS02790 Genome accession   NZ_AP017610
Coordinates   562816..563421 (+) Length   201 a.a.
NCBI ID   WP_001195017.1    Uniprot ID   -
Organism   Escherichia coli strain 20Ec-P-124     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 557816..568421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPZ02_RS29715 - 558370..558468 (+) 99 Protein_506 hypothetical protein -
  CPZ02_RS02755 (MRY16002_c4870) rsmS 558521..558682 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  CPZ02_RS02760 (MRY16002_c4880) priC 558696..559223 (-) 528 WP_000844858.1 primosomal replication protein N'' -
  CPZ02_RS02765 (MRY16002_c4890) ybaN 559293..559670 (+) 378 WP_001188905.1 DUF454 family protein -
  CPZ02_RS02775 (MRY16002_c4900) apt 559823..560374 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  CPZ02_RS02780 (MRY16002_c4910) dnaX 560503..562434 (+) 1932 WP_000122011.1 DNA polymerase III subunit gamma/tau -
  CPZ02_RS02785 (MRY16002_c4920) ybaB 562487..562816 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  CPZ02_RS02790 (MRY16002_c4930) recR 562816..563421 (+) 606 WP_001195017.1 recombination mediator RecR Machinery gene
  CPZ02_RS02795 (MRY16002_c4940) htpG 563531..565405 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  CPZ02_RS02805 (MRY16002_c4950) adk 565586..566230 (+) 645 WP_001220233.1 adenylate kinase -
  CPZ02_RS02810 (MRY16002_c4960) hemH 566362..567324 (+) 963 WP_001250105.1 ferrochelatase -
  CPZ02_RS02815 (MRY16002_c4970) aes 567321..568280 (-) 960 WP_000801797.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21972.01 Da        Isoelectric Point: 5.0751

>NTDB_id=57049 CPZ02_RS02790 WP_001195017.1 562816..563421(+) (recR) [Escherichia coli strain 20Ec-P-124]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEHEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=57049 CPZ02_RS02790 WP_001195017.1 562816..563421(+) (recR) [Escherichia coli strain 20Ec-P-124]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACACGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.005

0.438

Multiple sequence alignment