Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   MM522_RS19030 Genome accession   NZ_CP093067
Coordinates   3700460..3700690 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain ATC-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3695460..3705690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM522_RS19000 (MM522_19000) ridA 3695624..3696001 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  MM522_RS19005 (MM522_19005) spoVG 3696196..3696489 (+) 294 WP_003218346.1 septation regulator SpoVG -
  MM522_RS19010 (MM522_19010) glmU 3696682..3698052 (+) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  MM522_RS19015 (MM522_19015) prs 3698075..3699028 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  MM522_RS19020 (MM522_19020) ctc 3699113..3699727 (+) 615 WP_029726391.1 50S ribosomal protein L25/general stress protein Ctc -
  MM522_RS19025 (MM522_19025) pth 3699834..3700400 (+) 567 WP_029726390.1 aminoacyl-tRNA hydrolase -
  MM522_RS19030 (MM522_19030) subA/fin 3700460..3700690 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  MM522_RS19035 (MM522_19035) mfd 3700760..3704293 (+) 3534 WP_003243453.1 transcription-repair coupling factor -
  MM522_RS19040 (MM522_19040) spoVT 3704429..3704965 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=570487 MM522_RS19030 WP_003243417.1 3700460..3700690(+) (subA/fin) [Bacillus subtilis strain ATC-3]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=570487 MM522_RS19030 WP_003243417.1 3700460..3700690(+) (subA/fin) [Bacillus subtilis strain ATC-3]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGATTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAGGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCACATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1