Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   MM522_RS09080 Genome accession   NZ_CP093067
Coordinates   1806447..1807937 (-) Length   496 a.a.
NCBI ID   WP_029317970.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATC-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1801447..1812937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM522_RS09050 (MM522_09050) gudB 1801601..1802875 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  MM522_RS09055 (MM522_09055) mecB 1803031..1803615 (-) 585 WP_003230533.1 genetic competence negative regulator -
  MM522_RS09060 (MM522_09060) ypbG 1803774..1804553 (-) 780 WP_029317973.1 metallophosphoesterase -
  MM522_RS09065 (MM522_09065) ypbF 1804639..1805082 (-) 444 WP_029317972.1 YpbF family protein -
  MM522_RS09070 (MM522_09070) ypbE 1805145..1805867 (-) 723 WP_029317971.1 LysM peptidoglycan-binding domain-containing protein -
  MM522_RS09075 (MM522_09075) ypbD 1805818..1806420 (-) 603 WP_003230529.1 CPBP family intramembrane glutamic endopeptidase -
  MM522_RS09080 (MM522_09080) recS 1806447..1807937 (-) 1491 WP_029317970.1 ATP-dependent DNA helicase RecQ Machinery gene
  MM522_RS09085 (MM522_09085) gmmB 1807930..1808988 (-) 1059 WP_004398594.1 helix-turn-helix domain-containing protein -
  MM522_RS09090 (MM522_09090) fer 1809254..1809502 (+) 249 WP_003225461.1 ferredoxin -
  MM522_RS09095 (MM522_09095) fmnP 1809542..1810114 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  MM522_RS09100 (MM522_09100) serA 1810611..1812188 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56594.15 Da        Isoelectric Point: 6.4518

>NTDB_id=570414 MM522_RS09080 WP_029317970.1 1806447..1807937(-) (recS) [Bacillus subtilis strain ATC-3]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHQYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPRDFELQEQIIQMESVTAEEIADVIRLLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=570414 MM522_RS09080 WP_029317970.1 1806447..1807937(-) (recS) [Bacillus subtilis strain ATC-3]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAGGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCAATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTTCCGATTAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACTCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCAACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCATCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGACGTGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAAGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTTTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-180)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992