Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   MM522_RS06755 Genome accession   NZ_CP093067
Coordinates   1291538..1291969 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain ATC-3     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1286538..1296969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM522_RS06735 (MM522_06735) spoVS 1287099..1287359 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  MM522_RS06740 (MM522_06740) tdh 1287625..1288668 (+) 1044 WP_015252072.1 L-threonine 3-dehydrogenase -
  MM522_RS06745 (MM522_06745) kbl 1288681..1289859 (+) 1179 WP_029317804.1 glycine C-acetyltransferase -
  MM522_RS06750 (MM522_06750) miaB 1290007..1291536 (+) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  MM522_RS06755 (MM522_06755) ymcA 1291538..1291969 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  MM522_RS06760 (MM522_06760) cotE 1292223..1292768 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  MM522_RS06765 (MM522_06765) hexA 1292901..1295477 (+) 2577 WP_029317805.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=570405 MM522_RS06755 WP_003231834.1 1291538..1291969(+) (ymcA) [Bacillus subtilis strain ATC-3]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=570405 MM522_RS06755 WP_003231834.1 1291538..1291969(+) (ymcA) [Bacillus subtilis strain ATC-3]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1