Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   MM522_RS05770 Genome accession   NZ_CP093067
Coordinates   1089929..1090954 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain ATC-3     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1084929..1095954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM522_RS05735 (MM522_05735) ylbE 1085229..1085468 (+) 240 WP_003232231.1 YlbE-like family protein -
  MM522_RS05740 (MM522_05740) ylbF 1085584..1086033 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  MM522_RS05745 (MM522_05745) ylbG 1086088..1086360 (+) 273 WP_015715839.1 YlbG family protein -
  MM522_RS05750 (MM522_05750) rsmD 1086683..1087237 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  MM522_RS05755 (MM522_05755) coaD 1087242..1087727 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  MM522_RS05760 (MM522_05760) spoVV 1087738..1088964 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  MM522_RS05765 (MM522_05765) ylbK 1089145..1089927 (+) 783 WP_101172457.1 patatin family protein -
  MM522_RS05770 (MM522_05770) sepM 1089929..1090954 (+) 1026 WP_003245451.1 protease DdcP Regulator
  MM522_RS05775 (MM522_05775) ylbM 1090971..1092218 (-) 1248 WP_129010195.1 nucleotidyltransferase -
  MM522_RS05780 (MM522_05780) - 1092215..1092400 (-) 186 WP_003232215.1 hypothetical protein -
  MM522_RS05785 (MM522_05785) ylbN 1092428..1092946 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  MM522_RS05790 (MM522_05790) rpmF 1092968..1093147 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  MM522_RS05795 (MM522_05795) gerR 1093293..1093874 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  MM522_RS05800 (MM522_05800) ylbP 1093931..1094413 (-) 483 WP_014476736.1 N-acetyltransferase -
  MM522_RS05805 (MM522_05805) - 1094573..1095469 (+) 897 WP_101172455.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=570394 MM522_RS05770 WP_003245451.1 1089929..1090954(+) (sepM) [Bacillus subtilis strain ATC-3]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=570394 MM522_RS05770 WP_003245451.1 1089929..1090954(+) (sepM) [Bacillus subtilis strain ATC-3]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAATCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACTCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCT
CTTGAAATTTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTATGATATTGCGGGAACAGGTACGATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402