Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4C37_RS20630 Genome accession   NZ_CP075686
Coordinates   4545915..4546592 (-) Length   225 a.a.
NCBI ID   WP_002552676.1    Uniprot ID   A0A108WR79
Organism   Pseudomonas amygdali pv. lachrymans strain 8     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4540915..4551592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4C37_RS20605 (C4C37_20605) murB 4542474..4543493 (-) 1020 WP_005743846.1 UDP-N-acetylmuramate dehydrogenase -
  C4C37_RS20610 (C4C37_20610) kdsB 4543528..4544292 (-) 765 WP_004657844.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4C37_RS20615 (C4C37_20615) - 4544289..4544474 (-) 186 WP_002552679.1 Trm112 family protein -
  C4C37_RS20620 (C4C37_20620) lpxK 4544492..4545487 (-) 996 WP_005743845.1 tetraacyldisaccharide 4'-kinase -
  C4C37_RS20625 (C4C37_20625) - 4545487..4545918 (-) 432 WP_002552677.1 ExbD/TolR family protein -
  C4C37_RS20630 (C4C37_20630) exbB 4545915..4546592 (-) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4C37_RS20635 (C4C37_20635) comA 4546674..4548890 (-) 2217 WP_005743843.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4C37_RS20640 (C4C37_20640) - 4549027..4549815 (-) 789 WP_005743842.1 ABC transporter permease -
  C4C37_RS20645 (C4C37_20645) - 4549812..4550744 (-) 933 WP_002552672.1 ABC transporter ATP-binding protein -
  C4C37_RS20650 (C4C37_20650) - 4550928..4551551 (-) 624 WP_004657835.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24212.52 Da        Isoelectric Point: 8.5280

>NTDB_id=570194 C4C37_RS20630 WP_002552676.1 4545915..4546592(-) (exbB) [Pseudomonas amygdali pv. lachrymans strain 8]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=570194 C4C37_RS20630 WP_002552676.1 4545915..4546592(-) (exbB) [Pseudomonas amygdali pv. lachrymans strain 8]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAGCGTCTGTGGACGCTGCGTGCCAGCCGTATCACGCCGCCGCATCTGCTCGGACAGGTCTGGCAGTGGATCCAGGAAA
AGAAGCTCGACGGCGAAAAGCTCAAGCAACTGCGCGCCGACTCGCCTCTGGGTGAAATTCTCGCCGCAGGTCTGGCCAAT
TCCAGGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGGGTTATCCATGAACTGGAGCGCTACCT
GAGCGCGCTGGGTTCGATTGCCGCCATGGCACCGCTGCTTGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCG
GCTCGTTCAACAGTTCGGGGGCCACGGCCAATGCCGGTGTGCTCGCCGGTGGTATCTCCAAGGCGCTGATCTGTACCGCG
TCGGGCCTTATCGTGGCTATTCCGGCAATCTTCTTTCATCGCTTTCTGCAAAGTCGCGTCGATGAGCTGGTGGTCGGCAT
GGAGCAGCAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAAATCGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WR79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738