Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   C4C37_RS03870 Genome accession   NZ_CP075686
Coordinates   893980..895317 (-) Length   445 a.a.
NCBI ID   WP_005746393.1    Uniprot ID   A0AB37RC72
Organism   Pseudomonas amygdali pv. lachrymans strain 8     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 888980..900317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4C37_RS03860 (C4C37_03860) - 891027..892136 (-) 1110 WP_005746392.1 efflux RND transporter periplasmic adaptor subunit -
  C4C37_RS03865 (C4C37_03865) - 892218..892835 (-) 618 WP_002551994.1 TetR/AcrR family transcriptional regulator -
  C4C37_RS03870 (C4C37_03870) pilR 893980..895317 (-) 1338 WP_005746393.1 sigma-54-dependent transcriptional regulator Regulator
  C4C37_RS03875 (C4C37_03875) pilS 895320..896912 (-) 1593 WP_005746394.1 two-component system sensor histidine kinase NtrB Regulator
  C4C37_RS03880 (C4C37_03880) - 896902..897141 (-) 240 WP_002551997.1 PP0621 family protein -
  C4C37_RS03885 (C4C37_03885) - 897271..898293 (-) 1023 WP_005733851.1 outer membrane protein assembly factor BamD -
  C4C37_RS03890 (C4C37_03890) rluD 898443..899405 (+) 963 WP_005746395.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C4C37_RS03895 (C4C37_03895) pgeF 899402..900130 (+) 729 WP_005746396.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49846.99 Da        Isoelectric Point: 6.5777

>NTDB_id=570177 C4C37_RS03870 WP_005746393.1 893980..895317(-) (pilR) [Pseudomonas amygdali pv. lachrymans strain 8]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRCARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPCAQPARSIDSRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDRPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGSQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGMQPVARLNAQALDTLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQEPNSPSLADIDNLED
YLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=570177 C4C37_RS03870 WP_005746393.1 893980..895317(-) (pilR) [Pseudomonas amygdali pv. lachrymans strain 8]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGACGAGCCGGATATCCGCGAACTGCTGGAGATCACTCTGGGGCGCAT
GAAACTCGACACCCGATGCGCCCGCAATGTTGCCGAGGCCCACGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGTCTGCCCGACGGCAACGGCCTTGAGCTGGTGCAGCATATTCAGCACGGCTACCCCCATGTGCCAGTGGCG
ATGATCACTGCCCACGGCAACCTGGACACCGCGATTAATGCACTCAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
TGACCTCGGCAGGCTGCGCGAACTGGTCAATAGTGCGCTGAGCCTGCCTTGCGCCCAGCCAGCCCGCAGCATCGACAGCC
GCCTGCTGGGCGACTCGCTGGCGATGCGTACCTTGCGCAACCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAT
ATCAGTGGCGAATCGGGCAGTGGCAAGGAGCTTGTAGCGCGGCTGATCCACGAGCAGGGTCCGCGCATCGACAGACCGTT
CATACCGGTGAATTGCGGGGCCATTCCTTCCGAGCTGATGGAGAGTGAATTCTTTGGCCATCGCAAGGGCAGTTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAGGCGGCACATACCGGGACGCTGTTTCTCGACGAGGTGGCCGACCTACCG
CTGGCCATGCAGGTAAAGCTGTTGCGAGCCATCCAGGAAAAATCCATCCGCAGCGTAGGCAGCCAGCAAGAACAGATTGT
GGACGTACGCATTCTGTGCGCCACCCACAAAAATCTGAATGCAGAGGTTGCGGCAGGTCGCTTCCGTCAGGATCTGTATT
ACCGGTTAAACGTGATCGAAGTGCGCGTCCCCTCATTGCGCGAACGGCGCGAGGACATCGATCAACTGGCAGCCAGTGTT
CTAAAGCGACTTGCTGGCAATGGCATGCAACCGGTGGCGCGCCTGAATGCGCAGGCGCTGGACACGCTGAAGAGCTACCG
ATTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCCTACACGCTCTGTGAAAACGATGAAATTCATGCCA
GCGACCTGCGCCTTGCAGAGTCCGCCAGCCCCCAGGAGCCCAACAGCCCTAGCCTGGCCGACATCGACAACCTTGAAGAT
TACCTGGAGAGCATCGAGCGCAAGCTGATTCTGCAGGCCCTGGAAGAAACCCGCTGGAACCGTACCGCAGCGGCAGAAAG
GCTCAGCTTGTCCTTCAGATCGCTGCGTTACCGGCTGAAGAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.928

99.775

0.778
  pilR Acinetobacter baumannii strain A118

48.596

100

0.506
  luxO Vibrio cholerae strain A1552

36.937

99.775

0.369