Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MMZ66_RS03015 Genome accession   NZ_CP093031
Coordinates   646113..648110 (+) Length   665 a.a.
NCBI ID   WP_003084952.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 641113..653110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ66_RS02995 (MMZ66_02995) - 641349..642092 (-) 744 WP_003110215.1 metallophosphoesterase -
  MMZ66_RS03000 (MMZ66_03000) - 642297..643601 (+) 1305 WP_003084944.1 ferric reductase-like transmembrane domain-containing protein -
  MMZ66_RS03005 (MMZ66_03005) metK 643659..644849 (-) 1191 WP_003084948.1 methionine adenosyltransferase -
  MMZ66_RS03010 (MMZ66_03010) - 644865..645866 (-) 1002 WP_003113231.1 metalloregulator ArsR/SmtB family transcription factor -
  MMZ66_RS03015 (MMZ66_03015) recP/tkt 646113..648110 (+) 1998 WP_003084952.1 transketolase Machinery gene
  MMZ66_RS03020 (MMZ66_03020) - 648110..649174 (+) 1065 WP_003084954.1 hypothetical protein -
  MMZ66_RS03025 (MMZ66_03025) otnI 649155..649952 (-) 798 WP_003084956.1 2-oxo-tetronate isomerase -
  MMZ66_RS03030 (MMZ66_03030) epd 650167..651228 (+) 1062 WP_003084958.1 erythrose-4-phosphate dehydrogenase -
  MMZ66_RS03035 (MMZ66_03035) - 651234..652397 (+) 1164 WP_003084960.1 phosphoglycerate kinase -
  MMZ66_RS03040 (MMZ66_03040) - 652470..652670 (+) 201 WP_003084961.1 hypothetical protein -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 72139.24 Da        Isoelectric Point: 4.9688

>NTDB_id=570158 MMZ66_RS03015 WP_003084952.1 646113..648110(+) (recP/tkt) [Pseudomonas aeruginosa strain H03]
MPSRRERANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDYMQHNPSNPQWANRDRFVLSNGHGSMLIYSLLHLTGY
DLGIEDLKNFRQLNSRTPGHPEYGYTAGVETTTGPLGQGIANAVGMALAEKVLAAQFNRDGHAVVDHYTYAFLGDGCMME
GISHEVASLAGTLRLNKLIAFYDDNGISIDGEVNGWFTDDTPKRFEAYGWQVIRNVDGHDADEIKTAIDTARKSDQPTLI
CCKTVIGFGSPNKQGKEECHGAPLGADEIAATRAALGWEHAPFEIPAQIYAEWDAKETGAAQEAEWNKRFAAYQAAHPEL
AAELLRRLKGELPADFAEKAAAYVADVANKGETIASRKASQNALNAFGPLLPELLGGSADLAGSNLTLWKGCKGVSADDA
AGNYVFYGVREFGMSAIMNGVALHGGFIPYGATFLIFMEYARNAVRMSALMKQRVLYVFTHDSIGLGEDGPTHQPIEQLA
SLRLTPNLDTWRPADAVESAVAWKHAIERADGPSALIFSRQNLPHQARDVAQVADIARGGYVLKDCAGEPELILIATGSE
VGLAVQAYDKLSEQGRKVRVVSMPCTSVYEQQDESYKQSVLPVEVGARIAIEAAHADYWYKYVGLDGRIIGMTSFGESAP
APALFEHFGFTLDNVLAVAEELLED

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=570158 MMZ66_RS03015 WP_003084952.1 646113..648110(+) (recP/tkt) [Pseudomonas aeruginosa strain H03]
ATGCCCAGCCGTCGTGAGCGAGCCAATGCCATCCGTGCACTGAGCATGGATGCCGTGCAGAAAGCCAACAGCGGCCACCC
GGGCGCCCCGATGGGCATGGCCGATATCGCCGAGGTCCTCTGGCGCGACTACATGCAGCACAACCCGAGCAACCCGCAGT
GGGCCAACCGCGACCGCTTCGTGCTGTCCAACGGCCACGGCTCGATGCTGATCTACTCCCTGCTGCACCTCACCGGGTAC
GACCTCGGCATCGAGGACCTGAAGAACTTCCGCCAGCTCAACTCGCGCACCCCGGGCCACCCGGAGTACGGCTACACCGC
CGGCGTCGAGACCACCACCGGCCCGCTCGGCCAGGGCATCGCCAATGCGGTGGGCATGGCGCTGGCGGAGAAGGTCCTGG
CCGCCCAGTTCAACCGCGACGGCCACGCGGTGGTCGACCACTACACCTACGCCTTCCTCGGCGACGGCTGCATGATGGAA
GGCATTTCCCATGAGGTCGCCTCGCTGGCCGGCACCCTGCGCCTGAACAAGCTGATCGCCTTCTACGACGACAACGGCAT
TTCCATCGACGGCGAGGTCAACGGCTGGTTCACCGACGACACCCCGAAGCGCTTCGAGGCCTATGGCTGGCAAGTGATCC
GCAACGTCGACGGGCATGACGCCGACGAGATCAAGACCGCCATCGATACCGCCCGCAAGAGCGACCAGCCGACCCTGATC
TGCTGCAAGACCGTGATCGGCTTCGGCTCGCCGAACAAGCAGGGCAAGGAAGAGTGCCACGGCGCGCCGCTGGGTGCCGA
CGAGATCGCCGCGACCCGCGCCGCGCTGGGCTGGGAGCACGCTCCGTTCGAAATCCCGGCGCAGATCTACGCCGAGTGGG
ACGCCAAGGAAACCGGCGCCGCCCAGGAAGCCGAGTGGAACAAGCGTTTCGCCGCCTACCAGGCCGCCCATCCGGAACTG
GCCGCCGAACTGCTGCGCCGCCTGAAGGGCGAGCTGCCGGCCGACTTCGCCGAGAAGGCCGCGGCCTACGTCGCCGATGT
TGCCAACAAGGGTGAGACCATCGCCAGCCGCAAGGCCAGCCAGAACGCGCTGAACGCCTTCGGCCCGCTGCTGCCGGAGC
TGCTCGGCGGTTCCGCCGACCTGGCCGGCTCCAACCTGACCCTGTGGAAGGGCTGCAAGGGCGTCAGCGCCGACGACGCC
GCCGGCAACTACGTGTTCTACGGCGTGCGCGAATTCGGCATGAGCGCGATCATGAATGGCGTCGCCCTGCACGGCGGTTT
CATTCCCTACGGTGCGACCTTCCTGATCTTCATGGAATACGCGCGCAACGCCGTGCGCATGTCCGCACTGATGAAGCAGC
GCGTGCTCTACGTGTTCACCCACGACTCCATCGGCCTCGGCGAGGACGGCCCGACCCATCAGCCGATCGAACAACTGGCC
AGCCTGCGCCTGACCCCGAACCTGGACACCTGGCGCCCGGCCGACGCGGTCGAGTCGGCGGTGGCCTGGAAGCACGCCAT
CGAGCGTGCCGACGGTCCGTCCGCGCTGATCTTCTCCCGCCAGAACCTGCCGCACCAGGCGCGCGACGTCGCCCAGGTGG
CCGACATCGCCCGCGGCGGTTACGTGCTGAAGGACTGCGCCGGCGAGCCGGAACTGATCCTGATCGCCACCGGTTCGGAA
GTCGGCCTGGCCGTGCAGGCCTACGATAAGCTCAGCGAGCAGGGCCGCAAGGTCCGCGTGGTATCGATGCCATGCACCAG
CGTCTACGAGCAGCAGGACGAGTCCTACAAGCAGTCCGTGCTGCCGGTGGAAGTCGGCGCGCGCATCGCCATCGAGGCCG
CCCATGCCGACTACTGGTACAAGTACGTCGGTCTCGACGGGCGCATCATCGGCATGACCAGCTTCGGCGAGTCGGCTCCG
GCCCCGGCGCTGTTCGAGCACTTCGGCTTCACCCTGGACAACGTCCTGGCGGTGGCCGAGGAGCTGCTGGAAGACTGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(353-525)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(5-333)

Transketolase, C-terminal domain (Transketolase_C)

(540-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.333

99.248

0.48