Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KKI44_RS13140 Genome accession   NZ_CP075682
Coordinates   2915485..2916594 (-) Length   369 a.a.
NCBI ID   WP_214591156.1    Uniprot ID   -
Organism   Chryseobacterium sp. ZHDP1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2910485..2921594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKI44_RS13105 (KKI44_13105) - 2910798..2910941 (+) 144 WP_214587685.1 hypothetical protein -
  KKI44_RS13110 (KKI44_13110) - 2911080..2912051 (+) 972 WP_214587686.1 ion channel -
  KKI44_RS13115 (KKI44_13115) - 2912052..2912540 (+) 489 WP_214587687.1 YkgJ family cysteine cluster protein -
  KKI44_RS13120 (KKI44_13120) - 2912657..2912995 (+) 339 WP_214587688.1 hypothetical protein -
  KKI44_RS13125 (KKI44_13125) - 2913211..2913576 (-) 366 WP_214587689.1 iron chaperone -
  KKI44_RS13130 (KKI44_13130) - 2913580..2913717 (-) 138 WP_214587690.1 hypothetical protein -
  KKI44_RS13135 (KKI44_13135) gdhA 2913936..2915294 (-) 1359 WP_214587691.1 NADP-specific glutamate dehydrogenase -
  KKI44_RS13140 (KKI44_13140) dprA 2915485..2916594 (-) 1110 WP_214591156.1 DNA-processing protein DprA Machinery gene
  KKI44_RS13145 (KKI44_13145) - 2916631..2917401 (-) 771 WP_214587692.1 rhomboid family intramembrane serine protease -
  KKI44_RS13150 (KKI44_13150) - 2917475..2917615 (-) 141 WP_214587693.1 hypothetical protein -
  KKI44_RS13155 (KKI44_13155) - 2917671..2918600 (+) 930 WP_214587694.1 DUF3078 domain-containing protein -
  KKI44_RS13160 (KKI44_13160) - 2919020..2919529 (+) 510 WP_214587695.1 hypothetical protein -
  KKI44_RS13165 (KKI44_13165) - 2919526..2919874 (+) 349 Protein_2594 tRNA-binding protein -
  KKI44_RS13170 (KKI44_13170) - 2919967..2920671 (+) 705 WP_214587696.1 3'-5' exonuclease -
  KKI44_RS13175 (KKI44_13175) - 2920675..2921001 (+) 327 WP_087711919.1 SUF system Fe-S cluster assembly protein -
  KKI44_RS13180 (KKI44_13180) - 2921161..2921550 (+) 390 WP_214587697.1 hypothetical protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41482.17 Da        Isoelectric Point: 6.6885

>NTDB_id=570114 KKI44_RS13140 WP_214591156.1 2915485..2916594(-) (dprA) [Chryseobacterium sp. ZHDP1]
MYSEEHLYSIALRECNLIGDINFYKLVRIFGSAKNAWENTKKEYKKLDGFGSKIISDIGNPAHLKFAENELKFCETNQIK
INLRHLHDLPKLLNECDDAPVILYQKGHFDDAKPKISMVGTRNMTSYGKQFIEDFFKETSSCNFISVSGLALGVDKEVHE
QSLHHQVSTVAVLAHGFHTLYPSKNKKLSEKILEEEGTLFTEFNSSKKPDRENFIQRNRIVAGISPATIVVETAFGGGSM
STATFANQYNREVFALPGKITDKQSQGCNHLIFYNKASVISTVKDLVENLGFNNPEGRTGELFPHSEISIQLTENQNEIF
KIISENPYISLDDLADKTDLSSHKILPVILELELLGKVKSLSGRQFLAT

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=570114 KKI44_RS13140 WP_214591156.1 2915485..2916594(-) (dprA) [Chryseobacterium sp. ZHDP1]
ATGTATTCTGAAGAACATCTTTATTCCATTGCTCTGCGCGAGTGTAATTTAATCGGAGATATCAACTTTTATAAGCTTGT
GCGTATTTTCGGAAGTGCCAAAAATGCCTGGGAAAATACCAAAAAGGAATACAAAAAGCTGGACGGATTCGGCTCTAAAA
TAATTTCAGACATTGGAAATCCTGCTCATCTGAAGTTTGCTGAAAACGAACTGAAGTTTTGTGAGACCAATCAGATCAAA
ATTAATCTAAGACATCTCCATGATCTTCCTAAACTCTTAAACGAATGTGATGATGCTCCTGTAATTCTTTACCAAAAAGG
ACATTTTGATGATGCTAAACCAAAAATAAGCATGGTCGGAACTAGAAATATGACTTCCTACGGAAAACAATTTATTGAAG
ATTTTTTTAAGGAAACGTCATCCTGTAATTTTATTTCCGTGAGCGGTCTGGCTTTGGGAGTAGATAAAGAAGTTCATGAG
CAGTCTCTTCATCATCAGGTTTCTACGGTTGCGGTTTTAGCGCATGGTTTCCACACATTGTATCCTTCAAAAAATAAAAA
ATTATCCGAAAAAATTCTTGAAGAAGAAGGAACTTTATTCACAGAATTCAATTCATCCAAGAAGCCGGACCGCGAAAATT
TTATTCAGAGAAACAGAATTGTTGCCGGAATTTCTCCTGCGACAATTGTGGTAGAAACAGCTTTTGGAGGCGGTTCAATG
AGTACAGCAACGTTTGCCAATCAATATAACCGCGAAGTATTTGCGCTTCCCGGAAAGATTACAGATAAACAGAGCCAAGG
CTGTAATCATCTGATTTTTTACAACAAAGCTTCGGTCATTTCCACGGTAAAAGATCTGGTTGAAAATTTAGGATTTAATA
ATCCGGAAGGCAGAACGGGAGAATTATTTCCTCATAGTGAAATTTCAATCCAATTAACTGAAAATCAAAATGAAATATTT
AAAATAATATCTGAAAATCCATACATTTCTCTGGATGATCTTGCTGATAAAACCGATCTCTCTTCACACAAAATTTTGCC
TGTAATTTTAGAATTGGAGCTTTTGGGGAAGGTAAAATCACTTTCGGGGAGACAATTTTTAGCAACCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)

DprA winged helix domain (DprA_WH)

(310-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

54.945

98.645

0.542