Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KKI44_RS10160 Genome accession   NZ_CP075682
Coordinates   2229033..2230385 (+) Length   450 a.a.
NCBI ID   WP_076390791.1    Uniprot ID   A0A202C7Z1
Organism   Chryseobacterium sp. ZHDP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2224033..2235385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKI44_RS10140 (KKI44_10140) yidC 2224046..2225866 (-) 1821 WP_214590889.1 membrane protein insertase YidC -
  KKI44_RS10145 (KKI44_10145) - 2226048..2227655 (-) 1608 WP_214590890.1 CTP synthase -
  KKI44_RS10150 (KKI44_10150) - 2227929..2228498 (-) 570 WP_214590891.1 YceI family protein -
  KKI44_RS10155 (KKI44_10155) - 2228554..2228973 (-) 420 WP_214590892.1 hypothetical protein -
  KKI44_RS10160 (KKI44_10160) radA 2229033..2230385 (+) 1353 WP_076390791.1 DNA repair protein RadA Machinery gene
  KKI44_RS10165 (KKI44_10165) - 2230405..2231076 (+) 672 WP_214590893.1 class I SAM-dependent methyltransferase -
  KKI44_RS10170 (KKI44_10170) - 2231073..2231780 (+) 708 WP_214590894.1 VanW family protein -
  KKI44_RS10175 (KKI44_10175) - 2231777..2232370 (+) 594 WP_214590895.1 ACP phosphodiesterase -
  KKI44_RS10180 (KKI44_10180) - 2232374..2232874 (-) 501 WP_214590896.1 DUF6702 family protein -
  KKI44_RS10185 (KKI44_10185) - 2232871..2233173 (-) 303 WP_214590897.1 hypothetical protein -
  KKI44_RS10190 (KKI44_10190) - 2233149..2233391 (-) 243 WP_214590898.1 hypothetical protein -
  KKI44_RS10195 (KKI44_10195) - 2233459..2234037 (+) 579 WP_214590899.1 HupE/UreJ family protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 50031.61 Da        Isoelectric Point: 6.6946

>NTDB_id=570110 KKI44_RS10160 WP_076390791.1 2229033..2230385(+) (radA) [Chryseobacterium sp. ZHDP1]
MAKLKTAYFCQNCGTQYSQWMGQCKNCGQWNTLVEEVVEKTTSHKTPPFSKTKQHVINIVEVETNEEPRIKTPSEELNRV
LGGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKVFYVSGEESASQIKMRADRLTDIQNPNCFLFTETNLEKILHEAKK
LEPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNVPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRN
HLFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQR
SSTGFDAKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHYCFAGEIGLSGEIRP
IAQAEQRITEAEKLGYEKIFISNLNKLPKKKFGIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=570110 KKI44_RS10160 WP_076390791.1 2229033..2230385(+) (radA) [Chryseobacterium sp. ZHDP1]
ATGGCAAAACTCAAAACAGCATATTTCTGTCAGAACTGCGGAACCCAGTATTCCCAATGGATGGGACAATGCAAAAACTG
CGGACAATGGAATACCTTGGTGGAAGAAGTCGTGGAAAAAACAACTTCACACAAAACGCCGCCTTTTTCAAAAACAAAAC
AGCACGTCATCAATATCGTAGAAGTTGAAACCAATGAAGAACCGAGAATAAAAACACCTTCCGAAGAACTCAATAGGGTT
TTGGGAGGCGGAATTGTTTTAGGATCCGTTACACTGATCGGCGGAGAACCGGGAATCGGTAAGTCTACCCTGCTTCTTCA
ATTGGCTCTGAAAATGAAGAAAAAAGTTTTCTATGTTTCGGGGGAAGAAAGTGCTTCTCAAATTAAAATGAGAGCCGACC
GTCTGACTGATATCCAAAATCCCAACTGCTTTTTGTTTACAGAAACCAATCTGGAAAAAATTCTTCATGAAGCTAAAAAA
CTGGAGCCCGACTTTGTGATTATCGATTCCATTCAGACCTTACAATCTCAGTTGATTGAAAGTTCTCCCGGAACCGTTTC
CCAGATCCGCGAATGTTCCAATGAAATTATTAAATATGCCAAAGAAAACAACGTTCCTGTGTTTTTGGTCGGTCACATCA
CGAAAGACGGACAAATTGCCGGTCCGAAAGTTCTGGAACACATGGTGGATGTGGTTTTGAATTTCGATGGCGACAGAAAT
CATCTTTTCAGATTATTGAGAGCCAACAAAAACCGTTTCGGATCGACTTCCGAGATTGGGATTTATGAAATGATTTCTCA
GGGTTTAAAGGAAATTAAAAATCCATCTGAAATTTTAATCACCAAAAAATTCGAAGAACTTTCCGGAAATTCAGTCGCTG
TAACTCTGGAAGGAAACCGTCCGATGCTGTTGGAAATTCAGGCTTTGGTAAGTACCGCAGTTTACGGAACACCGCAGAGA
AGTTCCACCGGTTTTGATGCCAAAAGATTGAATATGCTTCTTGCAGTTCTGGAAAAAAGAGCAGGTTTCCAACTCGGAGC
AAAAGACGTTTTCTTAAATATTACCGGCGGAATAAAAACCGATGATCCGGCTTTAGATTTAGCGGTTGTTGCTTCCATTC
TTTCATCCAATGAAGATATTGCCATTTCCGAACATTATTGTTTTGCGGGAGAAATTGGTTTAAGTGGTGAAATACGCCCG
ATTGCACAGGCGGAACAGAGAATTACCGAAGCGGAAAAGTTAGGCTACGAAAAGATTTTTATTTCTAATCTGAACAAATT
ACCGAAGAAAAAATTCGGGATTAAAATAGAAGAAGTAAGCAAAATTGAGGATTTTCATGAAAGATTATTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-218)

Subunit ChlI of Mg-chelatase (ChlI)

(339-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A202C7Z1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.336

100

0.496
  radA Streptococcus mitis NCTC 12261

48.026

100

0.487
  radA Streptococcus pneumoniae D39

47.807

100

0.484
  radA Streptococcus pneumoniae TIGR4

47.807

100

0.484
  radA Streptococcus pneumoniae R6

47.807

100

0.484
  radA Streptococcus pneumoniae Rx1

47.807

100

0.484
  radA Streptococcus mitis SK321

49.882

94

0.469