Detailed information NTG0570074

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: MMZ67_RS11880
• Genome accession: NZ_CP093030
• Coordinates: 2493482..2496331 (+)
• Length: 949 a.a.
• NCBI ID: WP_023115022.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain H04
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2488482..2501331

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MMZ67_RS11845 (MMZ67_11850)	-	2488667..2488885 (-)	219	WP_003454927.1	AlpA family transcriptional regulator	-
MMZ67_RS11850 (MMZ67_11855)	-	2489027..2489785 (-)	759	WP_023657735.1	hypothetical protein	-
MMZ67_RS11855 (MMZ67_11860)	-	2490325..2491233 (-)	909	WP_012761385.1	LysR family transcriptional regulator	-
MMZ67_RS11860 (MMZ67_11865)	-	2491373..2491802 (+)	430	Protein_2351	IS66 family transposase	-
MMZ67_RS33335	-	2491924..2492157 (-)	234	Protein_2352	IS110 family transposase	-
MMZ67_RS11870 (MMZ67_11875)	-	2492502..2492783 (+)	282	WP_031755008.1	helix-turn-helix domain-containing protein	-
MMZ67_RS11875 (MMZ67_11880)	-	2492819..2493388 (+)	570	WP_012761383.1	Hsp20/alpha crystallin family protein	-
MMZ67_RS11880 (MMZ67_11885)	clpC	2493482..2496331 (+)	2850	WP_023115022.1	heat shock survival AAA family ATPase ClpK	Regulator
MMZ67_RS11885 (MMZ67_11890)	cls	2496349..2497779 (+)	1431	WP_031755009.1	cardiolipin synthase	-
MMZ67_RS11890 (MMZ67_11895)	ftsH	2497807..2499687 (+)	1881	WP_031755010.1	ATP-dependent zinc metalloprotease FtsH	-
MMZ67_RS11895 (MMZ67_11900)	trx-GI	2499684..2500124 (+)	441	WP_031755011.1	heat resistance system thioredoxin Trx-GI	-

Sequence

Protein

• Length: 949 a.a.
• Molecular weight: 104458.40 Da
• Isoelectric Point: 5.7974

>NTDB_id=570074 MMZ67_RS11880 WP_023115022.1 2493482..2496331(+) (clpC) [Pseudomonas aeruginosa strain H04]
MARKQCQVCGQPATVRVEANLNGRHSTMLLCDDHYRQLVRQQKRTVSPLEALFGSRSGLFEDFLGSDFFRIGDDAPSMAA
DTDEVVDASFGEPAPAGTGTARRRGSGLASRISEQSEALLQEAARHAAEFGRAEVDTEHLLLALSDSDVVKTILGQFKIK
VDDLKRQIESEAKRGDKPFEGEIGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMAREGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGELILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVMVPEPTVAQTMMILRGLRDTFEAHHKVSITEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYVASRKQYDKAAELGKHIEAKEAELKK
LVEEWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGS
KPVATFLFLGPTGVGKTELAKALAESIYGDEGALLRIDMSEYGERHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKARGAAGEEYEKTKGEVMDVLRGHFR
PEFLNRIDEIIVFHALGKEEIRHIVGLQLDRVARNAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGGIGKADHASARWDDKAERVVFERQEPPAKPAEPEKPDAANVAETPPSDASKPARKKKSAGGES

Nucleotide

• Length: 2850 bp

>NTDB_id=570074 MMZ67_RS11880 WP_023115022.1 2493482..2496331(+) (clpC) [Pseudomonas aeruginosa strain H04]
ATGGCCAGAAAACAATGCCAAGTCTGCGGCCAGCCCGCCACGGTGCGGGTGGAAGCCAATCTCAATGGTCGCCACAGCAC
CATGCTGTTGTGTGACGATCACTATCGCCAACTGGTGCGCCAGCAAAAGCGCACCGTCTCACCGCTGGAAGCCTTGTTCG
GCTCGCGCAGCGGGCTGTTCGAAGACTTCCTTGGCAGCGACTTCTTCCGCATCGGTGACGACGCACCGTCCATGGCGGCC
GATACCGACGAGGTCGTCGATGCCTCGTTCGGCGAACCCGCCCCGGCCGGTACGGGCACCGCGCGCCGTCGCGGCAGTGG
GCTCGCCAGCCGTATCAGCGAACAGTCCGAGGCCCTATTGCAGGAGGCCGCCCGACACGCTGCAGAGTTCGGGCGCGCCG
AAGTCGATACCGAACACCTGCTGCTGGCGCTATCCGACAGCGACGTGGTCAAGACCATCCTGGGGCAGTTCAAGATCAAG
GTCGATGACCTCAAGCGCCAGATCGAATCCGAAGCCAAGCGCGGCGATAAGCCGTTCGAGGGCGAGATCGGCGTGTCGCC
CCGGGTCAAGGACGCGCTCAGCCGTGCTTTCGTGGCCTCCAACGAACTCGGCCACTCTTATGTCGGGCCGGAGCATTTCC
TGATCGGGCTCGCCGAGGAAGGCGAAGGTTTGGCGGCCAACCTGCTGCGCCGTTACGGCCTCACGCCGCAAGCGCTGCGC
CAGCAGGTAAGCAAGGTGGTCGGCAAAGGGGCCGAGGATGGCCGCGCCGAGACGCCGACCAACACGCCGGAACTCGACAA
GTATTCGCGCGACCTCACCAAGATGGCGCGCGAGGGCAAGCTCGATCCGGTCATCGGCCGCGCGCAGGAGATCGAGACGA
CCATCGAAGTGCTGGCCCGGCGCAAGAAGAACAACCCGGTACTGATCGGCGAGCCCGGCGTCGGCAAGACCGCCATCGTC
GAAGGGCTGGCGCAGCGCATGGTCGCCGGCGAAGTGCCCGAGACGCTGCGCGACAAGCGTCTGGTCGAACTCAACATCAA
CGCCATGGTGGCAGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTCAAGGAAGTGACCGAGCACC
AGGGCGAGCTGATTCTCTTCATCGACGAGGTGCACACCATCGTCGGTGCAGGCCAGGGTGGCGGCGAAGGCGGGCTGGAC
GTGGCCAACGTGTTCAAGCCGATGATGGCGCGCGGCGAACTGAACCTGATCGGCGCCACCACGCTCAACGAGTATCAGAA
GTACATCGAGAAGGACGCCGCGCTGGAGCGTCGCTTCCAGCCGGTGATGGTGCCCGAGCCGACGGTAGCGCAGACCATGA
TGATCCTGCGCGGCCTGCGTGACACCTTCGAGGCGCACCACAAGGTCAGCATCACCGAGGATGCGATCATCGCCGCCGCC
GAGTTGTCGGACCGCTACATCACCGCGCGCTTTTTGCCTGACAAGGCCATCGACCTGCTCGACCAGGCGGCCGCACGCGT
GAAGCTGTCGGCCACGGCCCGCCCGGTGGCGGTGCAAGAGCTGGAGTCCGAACTGCACCAGCTGCGGCGTGAGCAGGACT
ATGTGGCCTCGCGCAAGCAGTACGACAAGGCCGCCGAGCTGGGCAAGCACATCGAGGCCAAAGAGGCCGAACTCAAGAAG
CTTGTCGAGGAATGGGAACGCGAGCGCGCCTCGGGCAGTGCCGAAGTCAAAGCCGAGCATGTCGCGCAGATCGTCTCGCG
CCTGACCGGCATTCCGGTCAACGAGCTGACGGTGGAAGAACGCGAGAAGCTGCTGCATCTGGAGCAGCGGCTGCACGAGC
GCCTCGTGGGCCAGGACGAAGCGGTGCGCGCGGTGGCCGATGCCGTGCGGTTGTCGCGCGCGGGCCTGCGCGAAGGCAGC
AAGCCGGTGGCGACTTTTCTGTTCCTCGGGCCGACCGGCGTGGGCAAGACCGAGCTCGCCAAGGCGCTGGCCGAGTCCAT
CTATGGCGATGAAGGTGCGCTGCTGCGCATCGACATGTCCGAGTACGGGGAACGCCATACCGTGGCACGCCTGGTGGGGG
CGCCTCCGGGTTACGTCGGCTACGACGAGGGTGGCCAGCTCACCGAGAAGGTGCGGCGCAAACCCTACAGCGTGTTGCTG
CTGGACGAGATCGAGAAGGCTCACCCCGACGTCTACAACATCCTGCTGCAGGTGTTCGACGACGGGCGGCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAATACCATCATCATCGCCACCTCGAACTTGGGCTCGGACATCATCCAGCGTCGGC
TGAAGGCCCGTGGCGCCGCCGGCGAGGAATACGAGAAGACCAAGGGCGAGGTGATGGACGTGCTGCGCGGACACTTCCGC
CCCGAGTTCCTCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGCAAGGAGGAGATCCGCCATATCGTCGGCCT
GCAGCTCGATCGTGTGGCCCGCAACGCCGCCAGCCAGGGCGTGACGCTGACCTTCGATCAGACCTTGATCGATCACTTCG
CGGAGGAAGGCTACAAGCCCGAGTTCGGCGCGCGTGAGCTCAAGCGGCTGATCCGCAGCGAGTTGGAAACTGCTCTGGCG
CGCGAGATGCTGGGTGGCGGTATCGGCAAGGCCGATCACGCCAGCGCCCGCTGGGACGACAAGGCCGAACGGGTGGTCTT
CGAGCGCCAGGAGCCACCCGCGAAGCCGGCCGAGCCTGAGAAGCCCGATGCCGCGAACGTGGCCGAGACGCCGCCGAGCG
ACGCGAGCAAGCCTGCGCGCAAGAAGAAGTCAGCGGGCGGCGAATCTTGA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (641-810)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (123-171)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (199-248)

• ATPase family associated with various cellular activities (AAA) (AAA) (307-440)

• AAA lid domain (AAA_lid_9) (449-547)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (816-894)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	50.818	83.772	0.426
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.419	85.669	0.372
clpC	Streptococcus thermophilus LMD-9	41.869	86.828	0.364
clpC	Streptococcus thermophilus LMG 18311	41.778	86.512	0.361
clpC	Streptococcus mutans UA159	41.963	85.88	0.36
clpC	Streptococcus pneumoniae Rx1	42.118	85.564	0.36
clpC	Streptococcus pneumoniae D39	42.118	85.564	0.36