Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   MMZ67_RS11605 Genome accession   NZ_CP093030
Coordinates   2438006..2438500 (-) Length   164 a.a.
NCBI ID   WP_031754979.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2433006..2443500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ67_RS11580 (MMZ67_11585) chrA 2433226..2434401 (+) 1176 WP_019752942.1 chromate resistance efflux protein ChrA -
  MMZ67_RS11585 (MMZ67_11590) - 2434461..2435054 (+) 594 WP_029380760.1 superoxide dismutase -
  MMZ67_RS11590 (MMZ67_11595) - 2435057..2436079 (+) 1023 WP_230258118.1 DUF1259 domain-containing protein -
  MMZ67_RS11595 (MMZ67_11600) - 2436181..2436636 (+) 456 WP_019752945.1 chromate resistance protein ChrB domain-containing protein -
  MMZ67_RS11600 (MMZ67_11605) - 2436636..2437850 (+) 1215 WP_031754978.1 MFS transporter -
  MMZ67_RS11605 (MMZ67_11610) radC 2438006..2438500 (-) 495 WP_031754979.1 DNA repair protein RadC Machinery gene
  MMZ67_RS11610 (MMZ67_11615) - 2438696..2439439 (-) 744 WP_031754980.1 thioredoxin domain-containing protein -
  MMZ67_RS11615 (MMZ67_11620) - 2439453..2442341 (-) 2889 WP_031754981.1 conjugative transfer ATPase -
  MMZ67_RS11620 (MMZ67_11625) - 2442341..2442775 (-) 435 WP_031754982.1 TIGR03751 family conjugal transfer lipoprotein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17906.62 Da        Isoelectric Point: 6.6460

>NTDB_id=570073 MMZ67_RS11605 WP_031754979.1 2438006..2438500(-) (radC) [Pseudomonas aeruginosa strain H04]
MSLVIADSRPESLTLIAAQHEDWIIRQAITLLENRVFKAGPALGSPAAVRDYLRLKLVAEPNEIFAVVFLDNQHQVLAFE
PLFKGTVDQTSVYPRVVVQRALTLNASVLILAHQHPSGNTEPSAADRAITERLKSALATVDVRVLDHFIVGKGSPYSFAE
AGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=570073 MMZ67_RS11605 WP_031754979.1 2438006..2438500(-) (radC) [Pseudomonas aeruginosa strain H04]
ATGTCTCTCGTCATCGCCGACTCCCGCCCGGAGTCGCTCACCCTGATCGCCGCCCAGCACGAAGACTGGATCATCCGGCA
GGCCATCACCCTGCTGGAGAACCGCGTGTTCAAGGCCGGTCCAGCGCTGGGCAGTCCCGCCGCCGTGCGCGACTACCTGC
GCCTGAAACTGGTCGCGGAGCCGAACGAAATCTTCGCCGTCGTGTTTCTCGACAACCAGCACCAGGTGCTCGCCTTTGAG
CCGCTGTTCAAGGGCACGGTCGACCAGACTTCGGTGTATCCGAGGGTGGTTGTCCAGCGTGCGCTGACGCTCAACGCCTC
GGTGCTGATCCTGGCGCATCAGCACCCCTCGGGGAACACCGAGCCCTCGGCCGCTGATCGTGCGATCACCGAGCGGCTGA
AGAGCGCCCTGGCCACCGTCGATGTCCGGGTGCTGGATCACTTCATCGTCGGCAAGGGCAGCCCGTACTCGTTCGCCGAA
GCCGGCTTGTTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

46.575

89.024

0.415