Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   KK132_RS11485 Genome accession   NZ_CP075681
Coordinates   2401720..2402520 (-) Length   266 a.a.
NCBI ID   WP_256633292.1    Uniprot ID   -
Organism   Bacillus velezensis strain C5     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2396720..2407520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KK132_RS11455 (KK132_11345) - 2397258..2397890 (+) 633 WP_014418348.1 helix-turn-helix domain-containing protein -
  KK132_RS11460 (KK132_11350) - 2398187..2398324 (+) 138 WP_014470646.1 hypothetical protein -
  KK132_RS11465 (KK132_11355) - 2398418..2399536 (+) 1119 WP_032874152.1 NADH-dependent flavin oxidoreductase -
  KK132_RS11470 (KK132_11360) - 2399663..2399875 (+) 213 WP_007408362.1 spore germination protein -
  KK132_RS11475 (KK132_11365) - 2400001..2400213 (+) 213 WP_014418351.1 spore germination protein -
  KK132_RS11480 (KK132_11370) alr 2400390..2401571 (+) 1182 WP_025649856.1 alanine racemase -
  KK132_RS11485 (KK132_11375) spo0A 2401720..2402520 (-) 801 WP_256633292.1 sporulation transcription factor Spo0A Regulator
  KK132_RS11490 (KK132_11380) spoIVB 2402801..2404081 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  KK132_RS11495 (KK132_11385) recN 2404245..2405975 (-) 1731 WP_032874060.1 DNA repair protein RecN Machinery gene
  KK132_RS11500 (KK132_11390) ahrC 2406007..2406456 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  KK132_RS11505 (KK132_11395) - 2406553..2407398 (-) 846 WP_007612503.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29688.14 Da        Isoelectric Point: 5.9132

>NTDB_id=570066 KK132_RS11485 WP_256633292.1 2401720..2402520(-) (spo0A) [Bacillus velezensis strain C5]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIDVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=570066 KK132_RS11485 WP_256633292.1 2401720..2402520(-) (spo0A) [Bacillus velezensis strain C5]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCGTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCAAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGATGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGACATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATTGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

94.757

100

0.951