Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   ATE38_RS07840 Genome accession   NZ_AP017377
Coordinates   1546827..1547978 (-) Length   383 a.a.
NCBI ID   WP_000020361.1    Uniprot ID   A0A0H2XEJ4
Organism   Staphylococcus aureus strain OC8     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1541827..1552978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATE38_RS07820 - 1542223..1543020 (-) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -
  ATE38_RS07825 - 1543194..1543409 (+) 216 WP_000026308.1 hypothetical protein -
  ATE38_RS07830 rny 1543706..1545265 (-) 1560 WP_001050913.1 ribonuclease Y -
  ATE38_RS07835 recA 1545619..1546662 (-) 1044 WP_000368166.1 recombinase RecA Machinery gene
  ATE38_RS07840 cinA 1546827..1547978 (-) 1152 WP_000020361.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  ATE38_RS07845 pgsA 1548205..1548783 (-) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ATE38_RS07850 - 1548817..1549209 (-) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  ATE38_RS07855 - 1549228..1550055 (-) 828 WP_000214890.1 YmfK family protein -
  ATE38_RS07860 - 1550160..1550864 (-) 705 WP_000646227.1 SDR family NAD(P)-dependent oxidoreductase -
  ATE38_RS07865 - 1550864..1552150 (-) 1287 WP_000664764.1 pitrilysin family protein -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43267.55 Da        Isoelectric Point: 6.1914

>NTDB_id=57003 ATE38_RS07840 WP_000020361.1 1546827..1547978(-) (cinA) [Staphylococcus aureus strain OC8]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLTNHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=57003 ATE38_RS07840 WP_000020361.1 1546827..1547978(-) (cinA) [Staphylococcus aureus strain OC8]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGCTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAACAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTTCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0H2XEJ4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.146

100

0.431


Multiple sequence alignment