Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | JFX55_RS07390 | Genome accession | NZ_CP075663 |
| Coordinates | 1415232..1415861 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain STEC2017-197 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1393683..1422524 | 1415232..1415861 | within | 0 |
Gene organization within MGE regions
Location: 1393683..1422524
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JFX55_RS07255 (JFX55_007255) | - | 1394546..1395160 (+) | 615 | WP_198790191.1 | phage baseplate assembly protein V | - |
| JFX55_RS07260 (JFX55_007260) | - | 1395153..1395590 (+) | 438 | WP_198790192.1 | phage GP46 family protein | - |
| JFX55_RS07265 (JFX55_007265) | - | 1395590..1396672 (+) | 1083 | WP_001146842.1 | baseplate J/gp47 family protein | - |
| JFX55_RS07270 (JFX55_007270) | - | 1396663..1397223 (+) | 561 | WP_000301574.1 | YmfQ family protein | - |
| JFX55_RS07275 (JFX55_007275) | - | 1397223..1398104 (+) | 882 | WP_198790193.1 | phage tail protein | - |
| JFX55_RS07280 (JFX55_007280) | - | 1398137..1398658 (-) | 522 | WP_198790194.1 | tail fiber assembly protein | - |
| JFX55_RS07285 (JFX55_007285) | - | 1398780..1399088 (-) | 309 | WP_252354524.1 | phage tail protein | - |
| JFX55_RS25045 | - | 1399015..1399200 (+) | 186 | WP_252354525.1 | hypothetical protein | - |
| JFX55_RS07290 (JFX55_007290) | - | 1399214..1399704 (+) | 491 | Protein_1437 | recombinase family protein | - |
| JFX55_RS25315 | - | 1399710..1399772 (+) | 63 | WP_353888208.1 | hypothetical protein | - |
| JFX55_RS07295 (JFX55_007295) | - | 1399863..1401920 (+) | 2058 | WP_198790195.1 | DUF6645 domain-containing protein | - |
| JFX55_RS07300 (JFX55_007300) | - | 1401978..1402157 (+) | 180 | WP_000221106.1 | DUF1378 family protein | - |
| JFX55_RS07305 (JFX55_007305) | - | 1402193..1402438 (+) | 246 | WP_001114107.1 | DUF826 domain-containing protein | - |
| JFX55_RS07310 (JFX55_007310) | - | 1402477..1402939 (-) | 463 | Protein_1442 | hypothetical protein | - |
| JFX55_RS07315 (JFX55_007315) | - | 1403054..1403254 (+) | 201 | WP_001443803.1 | Com family DNA-binding transcriptional regulator | - |
| JFX55_RS07320 (JFX55_007320) | - | 1403208..1403945 (+) | 738 | WP_000528256.1 | hypothetical protein | - |
| JFX55_RS07325 (JFX55_007325) | - | 1404075..1404185 (+) | 111 | Protein_1445 | histone-lysine N-methyltransferase | - |
| JFX55_RS07330 (JFX55_007330) | - | 1404154..1405173 (+) | 1020 | WP_001367167.1 | tyrosine-type recombinase/integrase | - |
| JFX55_RS07335 (JFX55_007335) | yccA | 1405581..1406240 (+) | 660 | WP_000375136.1 | FtsH protease modulator YccA | - |
| JFX55_RS07340 (JFX55_007340) | tusE | 1406331..1406660 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| JFX55_RS07345 (JFX55_007345) | yccX | 1406657..1406935 (-) | 279 | WP_000048250.1 | acylphosphatase | - |
| JFX55_RS07350 (JFX55_007350) | rlmI | 1407030..1408220 (+) | 1191 | WP_000116288.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| JFX55_RS07355 (JFX55_007355) | hspQ | 1408278..1408595 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| JFX55_RS07360 (JFX55_007360) | yccU | 1408640..1409053 (-) | 414 | WP_000665217.1 | CoA-binding protein | - |
| JFX55_RS07365 (JFX55_007365) | yccT | 1409226..1409888 (+) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| JFX55_RS07370 (JFX55_007370) | mgsA | 1409984..1410442 (+) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| JFX55_RS07375 (JFX55_007375) | helD | 1410474..1412528 (-) | 2055 | WP_000420533.1 | DNA helicase IV | - |
| JFX55_RS07380 (JFX55_007380) | yccF | 1412651..1413097 (+) | 447 | WP_001261231.1 | YccF domain-containing protein | - |
| JFX55_RS07385 (JFX55_007385) | yccS | 1413107..1415269 (+) | 2163 | WP_000875044.1 | YccS family putative transporter | - |
| JFX55_RS07390 (JFX55_007390) | sxy/tfoX | 1415232..1415861 (-) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| JFX55_RS07395 (JFX55_007395) | sulA | 1416080..1416589 (+) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| JFX55_RS07400 (JFX55_007400) | ompA | 1416946..1417986 (+) | 1041 | WP_000750416.1 | porin OmpA | - |
| JFX55_RS07405 (JFX55_007405) | matP | 1418062..1418514 (-) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| JFX55_RS07410 (JFX55_007410) | ycbZ | 1418700..1420460 (+) | 1761 | WP_000156526.1 | Lon protease family protein | - |
| JFX55_RS07415 (JFX55_007415) | fabA | 1420529..1421047 (+) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| JFX55_RS07420 (JFX55_007420) | rmf | 1421117..1421284 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| JFX55_RS07425 (JFX55_007425) | pqiC | 1421540..1422103 (-) | 564 | WP_000759129.1 | membrane integrity-associated transporter subunit PqiC | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=569985 JFX55_RS07390 WP_000839153.1 1415232..1415861(-) (sxy/tfoX) [Escherichia coli strain STEC2017-197]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=569985 JFX55_RS07390 WP_000839153.1 1415232..1415861(-) (sxy/tfoX) [Escherichia coli strain STEC2017-197]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |