Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JFX56_RS15300 Genome accession   NZ_CP075649
Coordinates   3157514..3158143 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain STEC17-190     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3152514..3163143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFX56_RS15285 (JFX56_15285) helD 3152756..3154810 (-) 2055 WP_000420533.1 DNA helicase IV -
  JFX56_RS15290 (JFX56_15290) yccF 3154933..3155379 (+) 447 WP_001261231.1 YccF domain-containing protein -
  JFX56_RS15295 (JFX56_15295) yccS 3155389..3157551 (+) 2163 WP_000875044.1 YccS family putative transporter -
  JFX56_RS15300 (JFX56_15300) sxy/tfoX 3157514..3158143 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JFX56_RS15305 (JFX56_15305) sulA 3158362..3158871 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JFX56_RS15310 (JFX56_15310) ompA 3159228..3160280 (+) 1053 WP_000750419.1 porin OmpA -
  JFX56_RS15315 (JFX56_15315) matP 3160355..3160807 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  JFX56_RS15320 (JFX56_15320) ycbZ 3160993..3162753 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=569951 JFX56_RS15300 WP_000839153.1 3157514..3158143(-) (sxy/tfoX) [Escherichia coli strain STEC17-190]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=569951 JFX56_RS15300 WP_000839153.1 3157514..3158143(-) (sxy/tfoX) [Escherichia coli strain STEC17-190]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1