Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JFX80_RS07860 Genome accession   NZ_CP075632
Coordinates   1529311..1529940 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2018-166     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1524311..1534940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFX80_RS07845 (JFX80_07850) helD 1524553..1526607 (-) 2055 WP_000420536.1 DNA helicase IV -
  JFX80_RS07850 (JFX80_07855) yccF 1526730..1527176 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JFX80_RS07855 (JFX80_07860) yccS 1527186..1529348 (+) 2163 WP_000875020.1 YccS family putative transporter -
  JFX80_RS07860 (JFX80_07865) sxy/tfoX 1529311..1529940 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JFX80_RS07865 (JFX80_07870) sulA 1530159..1530668 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JFX80_RS07870 (JFX80_07875) ompA 1531025..1532065 (+) 1041 WP_000750416.1 porin OmpA -
  JFX80_RS07875 (JFX80_07880) matP 1532141..1532593 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JFX80_RS07880 (JFX80_07885) ycbZ 1532779..1534539 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=569896 JFX80_RS07860 WP_000839153.1 1529311..1529940(-) (sxy/tfoX) [Escherichia coli strain 2018-166]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=569896 JFX80_RS07860 WP_000839153.1 1529311..1529940(-) (sxy/tfoX) [Escherichia coli strain 2018-166]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1