Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   MMZ71_RS29515 Genome accession   NZ_CP093022
Coordinates   6261963..6262487 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain H08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6256963..6267487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ71_RS29500 (MMZ71_29505) aroB 6258079..6259185 (-) 1107 WP_033954669.1 3-dehydroquinate synthase -
  MMZ71_RS29505 (MMZ71_29510) aroK 6259235..6259753 (-) 519 WP_003095833.1 shikimate kinase AroK -
  MMZ71_RS29510 (MMZ71_29515) pilQ 6259765..6261909 (-) 2145 WP_003114575.1 type 4a pilus secretin PilQ Machinery gene
  MMZ71_RS29515 (MMZ71_29520) comL/pilP 6261963..6262487 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  MMZ71_RS29520 (MMZ71_29525) pilO 6262484..6263107 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  MMZ71_RS29525 (MMZ71_29530) pilN 6263104..6263700 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  MMZ71_RS29530 (MMZ71_29535) pilM 6263700..6264764 (-) 1065 WP_058154770.1 type IV pilus assembly protein PilM Machinery gene
  MMZ71_RS29535 (MMZ71_29540) - 6264949..6267420 (+) 2472 WP_058154773.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=569815 MMZ71_RS29515 WP_003095836.1 6261963..6262487(-) (comL/pilP) [Pseudomonas aeruginosa strain H08]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=569815 MMZ71_RS29515 WP_003095836.1 6261963..6262487(-) (comL/pilP) [Pseudomonas aeruginosa strain H08]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362