Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   KHO27_RS24265 Genome accession   NZ_CP075595
Coordinates   5343070..5343471 (+) Length   133 a.a.
NCBI ID   WP_110702149.1    Uniprot ID   -
Organism   Pseudomonas sp. RC3H12     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5338070..5348471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHO27_RS24240 (KHO27_24240) pyrR 5339086..5339604 (-) 519 WP_102682235.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  KHO27_RS24245 (KHO27_24245) ruvX 5339657..5340082 (-) 426 WP_028688357.1 Holliday junction resolvase RuvX -
  KHO27_RS24250 (KHO27_24250) - 5340082..5340651 (-) 570 WP_110702122.1 YqgE/AlgH family protein -
  KHO27_RS24255 (KHO27_24255) - 5340728..5341627 (-) 900 WP_110702119.1 energy transducer TonB -
  KHO27_RS24260 (KHO27_24260) gshB 5341861..5342814 (-) 954 WP_214500898.1 glutathione synthase -
  KHO27_RS24265 (KHO27_24265) pilG 5343070..5343471 (+) 402 WP_110702149.1 twitching motility response regulator PilG Regulator
  KHO27_RS24270 (KHO27_24270) pilH 5343519..5343884 (+) 366 WP_046853925.1 twitching motility response regulator PilH -
  KHO27_RS24275 (KHO27_24275) - 5343881..5344435 (+) 555 WP_110702115.1 chemotaxis protein CheW -
  KHO27_RS24280 (KHO27_24280) - 5344499..5346523 (+) 2025 WP_102682257.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14653.02 Da        Isoelectric Point: 6.7047

>NTDB_id=569814 KHO27_RS24265 WP_110702149.1 5343070..5343471(+) (pilG) [Pseudomonas sp. RC3H12]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHKPRVIFVDVLMPRLDGYQTCAIIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRACVPGFAVQDPHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=569814 KHO27_RS24265 WP_110702149.1 5343070..5343471(+) (pilG) [Pseudomonas sp. RC3H12]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGCGAGGC
AGGCTGCGAGGTGATCACCGCCAGTGACGGCTTCGACGCCTTGGCCAAGATCGTCGACCACAAACCGCGGGTCATCTTCG
TCGACGTGCTGATGCCGCGCCTCGACGGCTACCAGACCTGCGCCATCATCAAGCACAACAGCGCGTTCAAGGACACCCCG
GTGATCCTGCTCTCTTCCCGCGACGGCCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGTTCCGACCAGTTCCTGACCAA
ACCGTTCAGCAAGGAAGAACTGCTCGATGCGATCCGTGCCTGCGTGCCCGGTTTCGCCGTGCAGGACCCACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

68.333

90.226

0.617