Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MMZ71_RS02780 Genome accession   NZ_CP093022
Coordinates   597283..599280 (+) Length   665 a.a.
NCBI ID   WP_023095141.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 592283..604280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ71_RS02760 (MMZ71_02760) - 592520..593263 (-) 744 WP_003129154.1 metallophosphoesterase family protein -
  MMZ71_RS02765 (MMZ71_02765) - 593468..594772 (+) 1305 WP_033954051.1 ferric reductase-like transmembrane domain-containing protein -
  MMZ71_RS02770 (MMZ71_02770) metK 594829..596019 (-) 1191 WP_016252913.1 methionine adenosyltransferase -
  MMZ71_RS02775 (MMZ71_02775) - 596035..597036 (-) 1002 WP_003113231.1 metalloregulator ArsR/SmtB family transcription factor -
  MMZ71_RS02780 (MMZ71_02780) recP/tkt 597283..599280 (+) 1998 WP_023095141.1 transketolase Machinery gene
  MMZ71_RS02785 (MMZ71_02785) - 599280..600344 (+) 1065 WP_019485375.1 hypothetical protein -
  MMZ71_RS02790 (MMZ71_02790) otnI 600325..601122 (-) 798 WP_003084956.1 2-oxo-tetronate isomerase -
  MMZ71_RS02795 (MMZ71_02795) epd 601337..602398 (+) 1062 WP_003084958.1 erythrose-4-phosphate dehydrogenase -
  MMZ71_RS02800 (MMZ71_02800) - 602404..603567 (+) 1164 WP_033954044.1 phosphoglycerate kinase -
  MMZ71_RS02805 (MMZ71_02805) - 603640..603840 (+) 201 WP_003084961.1 hypothetical protein -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 72162.28 Da        Isoelectric Point: 5.0222

>NTDB_id=569744 MMZ71_RS02780 WP_023095141.1 597283..599280(+) (recP/tkt) [Pseudomonas aeruginosa strain H08]
MPSRRERANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDYMQHNPSNPQWANRDRFVLSNGHGSMLIYSLLHLTGY
DLGIEDLKNFRQLNSRTPGHPEYGYTAGVETTTGPLGQGIANAVGMALAEKVLAAQFNRDGHAVVDHYTYAFLGDGCMME
GISHEVASLAGTLRLNKLIAFYDDNGISIDGEVHGWFTDDTPKRFEAYGWQVIRNVDGHDADEIKTAIDTARKSDQPTLI
CCKTVIGFGSPNKQGKEECHGAPLGADEIAATRAALGWEHAPFEIPAQIYAEWDAKETGAAQEAEWNKRFAAYQAAHPEL
AAELLRRLKGELPADFAEKAAAYVADVANKGETIASRKASQNALNAFGPLLPELLGGSADLAGSNLTLWKGCKGVSADDA
AGNYVFYGVREFGMSAIMNGVALHGGFIPYGATFLIFMEYARNAVRMSALMKQRVLYVFTHDSIGLGEDGPTHQPIEQLA
SLRLTPNLDTWRPADAVESAVAWKHAIERADGPSALIFSRQNLPHQARDVAQVADIARGGYVLKDCAGEPELILIATGSE
VGLAVQAYDKLSEQGRKVRVVSMPCTSVYEQQDESYKQSVLPVEVGARIAIEAAHADYWYKYVGLDGRIIGMTSFGESAP
APALFEHFGFTLDNVLAVAEELLED

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=569744 MMZ71_RS02780 WP_023095141.1 597283..599280(+) (recP/tkt) [Pseudomonas aeruginosa strain H08]
ATGCCCAGCCGTCGTGAGCGAGCCAATGCCATCCGTGCACTGAGCATGGATGCCGTGCAGAAAGCCAACAGCGGCCACCC
GGGCGCCCCGATGGGCATGGCCGATATCGCCGAGGTCCTCTGGCGCGACTACATGCAGCACAACCCGAGCAACCCGCAGT
GGGCCAACCGCGACCGCTTCGTGCTGTCCAACGGCCACGGCTCGATGCTGATCTACTCCCTGCTGCACCTCACCGGGTAC
GACCTCGGCATCGAGGACCTGAAGAACTTCCGCCAGCTCAACTCGCGCACCCCGGGCCACCCGGAGTACGGCTACACCGC
CGGCGTCGAGACCACCACCGGTCCGCTCGGCCAGGGCATCGCCAATGCGGTGGGCATGGCGCTGGCGGAGAAGGTCCTGG
CCGCCCAGTTCAACCGCGACGGCCACGCGGTGGTCGACCACTACACCTACGCCTTCCTCGGCGACGGCTGCATGATGGAA
GGCATTTCCCATGAGGTCGCCTCGCTGGCCGGCACCCTGCGCCTGAACAAGCTGATCGCCTTCTACGACGACAACGGCAT
TTCCATCGACGGCGAGGTCCACGGCTGGTTCACCGACGACACCCCGAAGCGCTTCGAGGCCTATGGCTGGCAAGTGATCC
GCAACGTCGACGGGCATGACGCCGACGAGATCAAGACCGCCATCGATACCGCGCGCAAGAGCGACCAGCCGACCCTGATC
TGCTGCAAGACCGTGATCGGCTTCGGCTCGCCGAACAAGCAGGGCAAGGAAGAGTGCCACGGCGCGCCGCTGGGCGCCGA
CGAGATCGCCGCGACCCGCGCCGCGCTGGGCTGGGAGCACGCTCCGTTCGAGATCCCGGCGCAGATCTACGCCGAGTGGG
ACGCCAAGGAAACCGGCGCCGCCCAGGAAGCCGAGTGGAACAAGCGTTTCGCCGCCTACCAGGCCGCCCATCCGGAACTG
GCCGCCGAACTGCTGCGCCGCCTGAAGGGCGAGCTGCCGGCCGACTTCGCCGAGAAGGCCGCGGCCTACGTCGCCGACGT
CGCCAACAAGGGCGAGACCATCGCCAGCCGCAAGGCCAGCCAGAACGCGCTGAACGCCTTCGGCCCGCTGCTGCCGGAAC
TGCTCGGCGGTTCCGCCGACCTGGCCGGCTCCAACCTGACCCTGTGGAAGGGCTGCAAGGGCGTCAGCGCCGACGACGCC
GCCGGCAACTACGTGTTCTACGGCGTGCGCGAGTTCGGCATGAGCGCGATCATGAATGGCGTCGCCCTGCACGGCGGTTT
CATTCCCTACGGTGCGACCTTCCTGATCTTCATGGAATACGCGCGCAACGCCGTGCGCATGTCCGCACTGATGAAGCAGC
GCGTGCTCTACGTGTTCACCCACGACTCCATCGGCCTCGGCGAGGACGGCCCGACCCACCAGCCGATCGAACAACTGGCC
AGCCTGCGCCTGACCCCGAACCTGGACACCTGGCGCCCGGCCGACGCGGTCGAGTCGGCGGTGGCCTGGAAGCATGCCAT
CGAGCGTGCCGACGGTCCGTCCGCGCTGATCTTCTCCCGCCAGAACCTGCCGCACCAGGCGCGCGACGTCGCCCAGGTGG
CCGACATCGCCCGCGGCGGCTACGTGCTGAAGGACTGCGCCGGCGAGCCGGAACTGATCCTGATCGCCACCGGTTCGGAA
GTCGGCCTGGCCGTGCAGGCCTACGACAAGCTCAGCGAGCAGGGCCGCAAGGTCCGCGTGGTATCGATGCCATGCACCAG
CGTCTACGAGCAGCAGGACGAGTCCTACAAGCAGTCCGTGCTGCCGGTGGAAGTCGGCGCGCGCATCGCCATCGAGGCCG
CCCATGCCGACTACTGGTACAAGTACGTCGGTCTCGACGGGCGCATCATCGGCATGACCAGCTTCGGCGAGTCGGCGCCG
GCCCCGGCGCTGTTCGAGCACTTCGGCTTCACCCTGGACAACGTCCTGGCGGTGGCCGAGGAGCTGCTGGAAGACTGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(540-655)

Transketolase, pyrimidine binding domain (Transket_pyr)

(353-525)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(5-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.333

99.248

0.48