Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   MMZ72_RS09855 Genome accession   NZ_CP093021
Coordinates   2127579..2128193 (-) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain H09     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2122579..2133193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ72_RS09830 (MMZ72_09830) - 2123036..2123299 (+) 264 WP_061194912.1 DUF1653 domain-containing protein -
  MMZ72_RS09835 (MMZ72_09835) topA 2123390..2125996 (+) 2607 WP_241469649.1 type I DNA topoisomerase -
  MMZ72_RS09840 (MMZ72_09840) - 2126103..2126621 (+) 519 WP_003113979.1 DUF6586 family protein -
  MMZ72_RS09845 (MMZ72_09845) - 2126827..2127060 (+) 234 WP_003109483.1 hypothetical protein -
  MMZ72_RS09850 (MMZ72_09850) sulA 2127082..2127567 (-) 486 WP_023088192.1 SOS-induced cell division inhibitor SulA -
  MMZ72_RS09855 (MMZ72_09855) dinR/lexA 2127579..2128193 (-) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  MMZ72_RS09860 (MMZ72_09860) psrA 2128425..2129126 (+) 702 WP_003091195.1 transcriptional regulator PsrA -
  MMZ72_RS09865 (MMZ72_09865) nagZ 2129320..2130318 (+) 999 WP_024917570.1 beta-N-acetylhexosaminidase -
  MMZ72_RS09870 (MMZ72_09870) - 2130330..2131067 (+) 738 WP_086339949.1 S-methyl-5'-thioinosine phosphorylase -
  MMZ72_RS09875 (MMZ72_09875) - 2131109..2131738 (-) 630 WP_024917568.1 CsiV family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=569661 MMZ72_RS09855 WP_003091196.1 2127579..2128193(-) (dinR/lexA) [Pseudomonas aeruginosa strain H09]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=569661 MMZ72_RS09855 WP_003091196.1 2127579..2128193(-) (dinR/lexA) [Pseudomonas aeruginosa strain H09]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAGGATCATGGCTTTCCGCCGAC
CCGCGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAAGCGCTGGCGCGCAAGG
GCGCCATCGAAATGACCCCGGGCGCCTCCCGCGGCATCCGCATTCCCGGCTTCGAGCCGCATGCCGCCAACGACGACGAG
GGCCTGCCGGTAATCGGTCGGGTCGCCGCCGGGGCGCCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTAGCCGTCCACGTCACCCGCGAAGCACGCAACGGCCAGGTGGTGGTCGCACGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAGGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387