Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   MMZ72_RS02095 Genome accession   NZ_CP093021
Coordinates   451934..452299 (+) Length   121 a.a.
NCBI ID   WP_024918009.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H09     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446934..457299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ72_RS02065 (MMZ72_02065) pyrR 447557..448069 (-) 513 WP_033972296.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  MMZ72_RS02070 (MMZ72_02070) ruvX 448181..448615 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  MMZ72_RS02075 (MMZ72_02075) - 448615..449184 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  MMZ72_RS02080 (MMZ72_02080) - 449233..450126 (-) 894 WP_034051215.1 energy transducer TonB -
  MMZ72_RS02085 (MMZ72_02085) gshB 450272..451225 (-) 954 WP_241469355.1 glutathione synthase -
  MMZ72_RS02090 (MMZ72_02090) pilG 451480..451887 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  MMZ72_RS02095 (MMZ72_02095) pilH 451934..452299 (+) 366 WP_024918009.1 twitching motility response regulator PilH Machinery gene
  MMZ72_RS02100 (MMZ72_02100) - 452349..452885 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  MMZ72_RS02105 (MMZ72_02105) pilJ 452971..455019 (+) 2049 WP_024918008.1 chemotaxis chemoreceptor PilJ -
  MMZ72_RS02110 (MMZ72_02110) pilK 455080..455955 (+) 876 WP_024918007.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13289.30 Da        Isoelectric Point: 5.1961

>NTDB_id=569638 MMZ72_RS02095 WP_024918009.1 451934..452299(+) (pilH) [Pseudomonas aeruginosa strain H09]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSSIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=569638 MMZ72_RS02095 WP_024918009.1 451934..452299(+) (pilH) [Pseudomonas aeruginosa strain H09]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGCCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTGGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGGCAGCTGACCAAGGACGCCGAGACCAGCTCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGTGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAAACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364