Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   KIW23_RS07555 Genome accession   NZ_CP075561
Coordinates   1582857..1583573 (+) Length   238 a.a.
NCBI ID   WP_070788154.1    Uniprot ID   A0A9Q5NZU9
Organism   Floricoccus penangensis strain ML061-4     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1577857..1588573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIW23_RS07540 (KIW23_07555) pyrH 1578184..1578900 (-) 717 WP_070788151.1 UMP kinase -
  KIW23_RS07545 (KIW23_07560) treC 1578995..1580608 (-) 1614 WP_251314422.1 alpha,alpha-phosphotrehalase -
  KIW23_RS07550 (KIW23_07565) treP 1580662..1582716 (-) 2055 WP_251314423.1 PTS system trehalose-specific EIIBC component -
  KIW23_RS07555 (KIW23_07570) treR 1582857..1583573 (+) 717 WP_070788154.1 trehalose operon repressor Regulator
  KIW23_RS07560 (KIW23_07575) pknB 1583628..1585646 (-) 2019 WP_251314424.1 Stk1 family PASTA domain-containing Ser/Thr kinase -
  KIW23_RS07565 (KIW23_07580) - 1585630..1586394 (-) 765 WP_251314425.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  KIW23_RS07570 (KIW23_07585) rsmB 1586422..1587738 (-) 1317 WP_251314426.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27922.74 Da        Isoelectric Point: 4.9754

>NTDB_id=569568 KIW23_RS07555 WP_070788154.1 1582857..1583573(+) (treR) [Floricoccus penangensis strain ML061-4]
MKKYELIFQDLENKILKKIYDEGEFLPSEMELSDYYEASRATIRQALNILESRGFIQKQKGKGSLVISSEKLNFPISGLT
SYKELQESLDFNSSTTVLKFEKIQIDEGLHLLTLLPKDSYAWHILRARKIEGKYSVLDRDYLLYDLAPDLTEDILQNSLY
EYLEDELGLVISYANKEITIDFLDEDDRKYIDLAKIDHHVVSVKSHVYLADTTPLQYTESRHQVDKFRFTEFARRQKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=569568 KIW23_RS07555 WP_070788154.1 1582857..1583573(+) (treR) [Floricoccus penangensis strain ML061-4]
ATGAAAAAATATGAATTAATCTTTCAAGATTTAGAAAATAAAATATTAAAAAAAATTTATGATGAAGGGGAATTCCTTCC
AAGCGAAATGGAATTATCTGACTACTATGAAGCCAGCAGAGCTACTATAAGACAAGCTCTAAATATACTAGAAAGCCGTG
GTTTTATTCAAAAACAAAAAGGCAAAGGAAGTTTGGTAATTTCATCAGAAAAACTCAATTTTCCTATTTCTGGTTTAACA
AGTTATAAAGAACTTCAAGAAAGTTTAGATTTCAATAGTTCAACTACAGTATTGAAGTTTGAAAAAATCCAAATTGACGA
GGGACTTCATCTCTTAACACTGCTTCCAAAAGATTCATATGCTTGGCATATTTTAAGAGCTCGAAAAATAGAAGGAAAAT
ATTCTGTTTTAGACCGCGATTACCTTCTATATGATCTTGCACCTGATTTAACAGAAGATATACTACAAAATTCTCTTTAT
GAATATTTAGAGGATGAACTGGGTCTTGTTATTTCATATGCAAATAAAGAAATAACAATTGATTTTCTTGACGAAGACGA
TCGTAAATATATAGATTTAGCTAAAATTGATCATCATGTCGTTAGTGTGAAAAGTCACGTATATCTTGCTGATACCACTC
CGCTTCAATATACCGAAAGTCGCCACCAAGTTGATAAATTCAGATTTACTGAATTCGCAAGAAGACAGAAAATATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-228)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

48.523

99.58

0.483