Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   KIW23_RS02860 Genome accession   NZ_CP075561
Coordinates   611171..612979 (+) Length   602 a.a.
NCBI ID   WP_251315286.1    Uniprot ID   -
Organism   Floricoccus penangensis strain ML061-4     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 606171..617979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIW23_RS02835 (KIW23_02850) - 606323..607009 (+) 687 WP_070788797.1 amino acid ABC transporter permease -
  KIW23_RS02840 (KIW23_02855) - 607006..607740 (+) 735 WP_251315283.1 amino acid ABC transporter ATP-binding protein -
  KIW23_RS02845 (KIW23_02860) ispG 607915..609018 (+) 1104 WP_070788795.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  KIW23_RS02850 (KIW23_02865) - 609002..610090 (+) 1089 WP_251315284.1 YdcF family protein -
  KIW23_RS02855 (KIW23_02870) - 610155..611132 (+) 978 WP_251315285.1 competence protein CoiA -
  KIW23_RS02860 (KIW23_02875) pepF 611171..612979 (+) 1809 WP_251315286.1 oligoendopeptidase F Regulator
  KIW23_RS02865 (KIW23_02880) - 612972..613682 (+) 711 WP_070788792.1 O-methyltransferase -
  KIW23_RS02870 (KIW23_02885) - 613871..614806 (+) 936 WP_251315287.1 peptidylprolyl isomerase -
  KIW23_RS02875 (KIW23_02890) - 615010..615522 (+) 513 WP_251315288.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69191.09 Da        Isoelectric Point: 4.5734

>NTDB_id=569558 KIW23_RS02860 WP_251315286.1 611171..612979(+) (pepF) [Floricoccus penangensis strain ML061-4]
MAKNRNEIAEDRKWDLTSVFDTDQAWDAEYEAVSKELDEARKLAGHLTDSASSLLATTKIELAIAQRVERLYVYASMKND
QDTTIAKYQELQAKATALYAKYGETFAFYEPEFMTLTEDELAEFKVEVPELNDFKHFFEKLLSKKAHVLSSAEEALLAGA
GEIFGASAETFEILDNADIIFPTIKDSEGNDVQLTHGNYISFMENKDREIRKNAYQALYSIYNQFQNTYAKTLGSNVKVH
NFQAKTRKYNSARAAALAENHIPESVFDTLVESVNKHLPLLHRYVNLRKEILGIDDLKMYDMYAPLSDLDYKFTYDQAVD
KTIDTLKIFGPDYLERVKRSFDERWIDVEENKGKRSGAYSGGSYDTNAFMLLNWHDTLDNLFTLVHEMGHSMHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLEEIKDDKTRFAILNHYLDGFRGTVFRQTQFAEFEHDIHEADAAGTVLTSEF
LNNLYADLNEKYYGISKEENPEIQYEWARIPHFYYNYYVFQYSTGFAAASYLAEKIVHGTEQDKENYLNYLKAGNSDYPL
DVIARAGVDMTNSVYLDEAFKVFETRLTELEELVAKGAHLNG

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=569558 KIW23_RS02860 WP_251315286.1 611171..612979(+) (pepF) [Floricoccus penangensis strain ML061-4]
ATGGCAAAAAATAGAAATGAAATTGCTGAAGATAGAAAATGGGATCTAACTAGTGTTTTTGATACTGATCAAGCTTGGGA
TGCTGAGTACGAGGCGGTTTCTAAAGAACTTGACGAAGCTAGGAAATTAGCTGGACATCTAACAGACTCAGCTTCATCTT
TACTTGCTACTACAAAGATTGAACTAGCTATCGCTCAACGTGTTGAGAGACTTTATGTCTATGCTTCTATGAAGAACGAT
CAAGATACTACAATAGCGAAGTACCAAGAATTACAAGCAAAAGCAACAGCTTTATATGCTAAATATGGTGAAACTTTTGC
CTTCTATGAGCCAGAATTTATGACTCTTACTGAGGATGAATTAGCTGAATTTAAAGTTGAAGTACCTGAACTTAACGATT
TTAAACATTTCTTTGAAAAATTATTAAGTAAAAAAGCTCATGTTCTTTCATCTGCTGAGGAAGCATTATTAGCTGGTGCC
GGAGAAATTTTTGGAGCATCTGCTGAGACTTTTGAAATTCTTGATAATGCAGATATTATTTTCCCAACTATCAAAGATTC
AGAAGGAAATGATGTTCAATTAACACATGGTAATTATATTTCATTTATGGAAAATAAGGACCGTGAAATTAGAAAAAATG
CTTACCAAGCTCTTTACAGTATTTATAATCAATTCCAAAATACGTATGCTAAGACTCTAGGTTCTAATGTTAAAGTGCAT
AACTTCCAAGCAAAAACTCGTAAATATAATTCAGCTAGAGCTGCGGCACTTGCTGAAAATCATATTCCTGAAAGTGTTTT
TGATACATTAGTTGAAAGTGTTAATAAACATCTACCTCTTTTACATCGTTATGTTAATTTACGTAAGGAAATTTTAGGAA
TCGATGATCTTAAAATGTATGATATGTATGCTCCTCTCTCTGATCTTGATTATAAATTTACTTATGATCAAGCAGTTGAT
AAAACAATCGACACACTTAAAATTTTTGGACCAGATTATTTAGAGCGTGTTAAACGTTCATTTGATGAGAGATGGATTGA
TGTTGAGGAAAATAAAGGGAAACGTAGTGGTGCTTATTCAGGTGGCTCTTACGATACTAATGCCTTCATGCTTTTAAACT
GGCACGATACATTAGATAACTTATTTACTTTAGTTCATGAAATGGGTCATAGTATGCACTCAACCTTTACTAGGGAAAAT
CAACCATATGTGTATGGTGATTATTCAATTTTCCTAGCGGAGATTGCATCAACAACTAATGAAAATATATTAACTGAAAC
TTTACTTGAAGAAATTAAAGATGATAAAACTCGTTTTGCTATTCTTAACCATTATCTTGACGGTTTCCGTGGTACAGTAT
TCCGTCAAACTCAATTTGCTGAGTTTGAACATGATATCCATGAAGCAGATGCTGCGGGGACTGTTTTAACAAGTGAATTC
TTGAATAATTTATATGCTGATTTAAATGAGAAGTATTACGGTATTTCAAAAGAAGAAAATCCAGAAATTCAATATGAATG
GGCACGCATTCCTCATTTCTATTATAATTATTATGTTTTCCAATATTCAACTGGATTTGCAGCTGCAAGTTACTTAGCTG
AAAAAATTGTTCATGGAACTGAACAAGACAAAGAAAACTATTTAAATTATCTAAAAGCTGGAAATAGTGATTATCCACTT
GATGTAATTGCTCGAGCAGGTGTGGATATGACTAATTCAGTCTATCTTGATGAAGCTTTTAAGGTTTTTGAAACTCGTTT
AACTGAGCTAGAAGAGTTGGTTGCTAAAGGAGCACATCTAAATGGTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

66.722

99.834

0.666