Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   KHS93_RS07085 Genome accession   NZ_CP075547
Coordinates   1366167..1366763 (+) Length   198 a.a.
NCBI ID   WP_069473385.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1361167..1371763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS07055 (KHS93_07055) - 1361381..1361836 (+) 456 WP_014304922.1 flavodoxin -
  KHS93_RS07060 (KHS93_07060) dapD 1361918..1362628 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  KHS93_RS07065 (KHS93_07065) - 1362699..1363823 (+) 1125 WP_069473384.1 N-acetyldiaminopimelate deacetylase -
  KHS93_RS07070 (KHS93_07070) - 1363884..1364129 (+) 246 WP_003154596.1 YkuS family protein -
  KHS93_RS07075 (KHS93_07075) - 1364163..1364969 (-) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  KHS93_RS07080 (KHS93_07080) - 1365257..1365715 (+) 459 WP_024085241.1 TlpA disulfide reductase family protein -
  KHS93_RS07085 (KHS93_07085) rok 1366167..1366763 (+) 597 WP_069473385.1 transcriptional regulator Rok Regulator
  KHS93_RS07090 (KHS93_07090) - 1366784..1367776 (-) 993 WP_069473386.1 sporulation protein -
  KHS93_RS07095 (KHS93_07095) - 1367922..1368524 (+) 603 WP_044053163.1 molybdenum cofactor guanylyltransferase -
  KHS93_RS07100 (KHS93_07100) - 1368576..1369595 (+) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  KHS93_RS07105 (KHS93_07105) glp 1369613..1370905 (+) 1293 WP_069473387.1 gephyrin-like molybdotransferase Glp -
  KHS93_RS07110 (KHS93_07110) mobB 1370866..1371387 (+) 522 WP_046559554.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22556.58 Da        Isoelectric Point: 9.6909

>NTDB_id=569449 KHS93_RS07085 WP_069473385.1 1366167..1366763(+) (rok) [Bacillus amyloliquefaciens strain SN16-1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQQQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=569449 KHS93_RS07085 WP_069473385.1 1366167..1366763(+) (rok) [Bacillus amyloliquefaciens strain SN16-1]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCAGCAGATGCAGTCTATTACGTCTCTTCCCGCAGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCGAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

87.629

97.98

0.859