Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   MMZ75_RS05400 Genome accession   NZ_CP093016
Coordinates   1149400..1150746 (-) Length   448 a.a.
NCBI ID   WP_003160919.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1144400..1155746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ75_RS05365 (MMZ75_05365) thiS 1144634..1144834 (-) 201 WP_003084514.1 sulfur carrier protein ThiS -
  MMZ75_RS05370 (MMZ75_05370) - 1144937..1145314 (-) 378 WP_003121748.1 DUF423 domain-containing protein -
  MMZ75_RS05375 (MMZ75_05375) mtgA 1145351..1146082 (+) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  MMZ75_RS05380 (MMZ75_05380) - 1146087..1146692 (-) 606 WP_003084511.1 hypothetical protein -
  MMZ75_RS05385 (MMZ75_05385) rpoH 1146757..1147611 (-) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  MMZ75_RS05390 (MMZ75_05390) ftsX 1147725..1148732 (-) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  MMZ75_RS05395 (MMZ75_05395) ftsE 1148732..1149403 (-) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  MMZ75_RS05400 (MMZ75_05400) pilA 1149400..1150746 (-) 1347 WP_003160919.1 signal recognition particle-docking protein FtsY Machinery gene
  MMZ75_RS05405 (MMZ75_05405) - 1150867..1152264 (+) 1398 WP_003084498.1 pitrilysin family protein -
  MMZ75_RS05410 (MMZ75_05410) - 1152257..1153744 (+) 1488 WP_003102862.1 pitrilysin family protein -
  MMZ75_RS05415 (MMZ75_05415) rsmD 1153744..1154340 (+) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  MMZ75_RS05420 (MMZ75_05420) - 1154343..1154909 (+) 567 WP_003084491.1 hypothetical protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 47646.03 Da        Isoelectric Point: 4.6083

>NTDB_id=569440 MMZ75_RS05400 WP_003160919.1 1149400..1150746(-) (pilA) [Pseudomonas aeruginosa strain H15]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGEG
MASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAR
EPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA
KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGT
AKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=569440 MMZ75_RS05400 WP_003160919.1 1149400..1150746(-) (pilA) [Pseudomonas aeruginosa strain H15]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCA
GCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATCGGCGAAGGC
ATGGCCAGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGCCGA
CGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCG
CGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGC
GAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCA
ACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCG
AGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCC
AAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCTGAA
GAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGC
AGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTTGCCCTGACCAAACTGGACGGCACC
GCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGA
CGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(158-223)

SRP54-type protein, GTPase domain (SRP54)

(243-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.907

95.982

0.46